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72 protocols using tgf β

1

Immunofluorescence Analysis of Recellularized Scaffolds

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EpC cells were viable after unfreezing and were seeded on coverslips in a 24-well plate (5 × 104 cells) for 7 days. Cells were PFA (Synth) fixed for 20 minutes. Coverslips were washed in PBS 1% + 0.5% Tween-20 (Synth) solution and incubated with primary antibodies diluted in 2% PBS + BSA: E-Cadherin (24E10, Cell Signaling, 1:200), N-Cadherin (13A9, Cell Signaling, 1:200), Vimentin (GTX35160, GeneTex, 1:100), Cytokeratin 18 (RGE53, Novus, 1:200), β2 Tubulin (sc-47751, Santa Cruz Biotechnology, 1:200), VEGF (ac12013315, Bioss), CD44 (#GTX80086,Genetex,1:100), TGF-β (#SC-146, Santa Cruz Biotechnology, 1:100), CD31 (#ab32457, Abcam, 1;100), PCNA (ma5-11358, Invitrogen, 1:100) and hyaluronic acid (#c41975, LS Bio, 1:100) for 1 hour at 37°C. Then, Alexafluor 488/594 secondary antibodies (#A30008/#A-11094, Thermo Fisher) were added at concentration 1:200 for 1 hour at 4°C. Recellularized scaffolds and the coverslips were carefully washed, followed by DAPi (Sigma-Aldrich) incubation for 10 minutes for nuclei stain. The samples were analyzed in Confocal Microscope – Olympus Fluo View 1000 (CADI-FMVZ).
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2

Protein Extraction and Western Blot Analysis

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The total protein was extracted from the cells using the M-PER mammalian protein extraction reagent (Pierce, IL, USA) or from rat joint synovial tissues using the T-PER tissue protein extraction reagent (Pierce). Equal amounts of protein (25 μg per lane), estimated by a bicinchoninic acid (BCA) protein assay kit (Pierce), were loaded onto (11%) SDS-PAGE gels and transferred onto nitrocellulose membranes. The blots were probed with a monoclonal antibody against rat Smad4 (1:300), TGF-β (1:800), α-SMA (1:600), collagen I (1:800), collagen III (1:600), Lama1 (1:800), Timp1 (1:800) and beta actin (1:1200) (Santa Cruz, USA), followed by the secondary HRP-conjugated anti-mouse/rabbit antibody (Santa Cruz, USA). After washing, the bands were detected by chemiluminescence and imaged with X-ray films. beta actin was used as an endogenous reference for normalization.
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3

Chondrocyte Protein Expression Analysis

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Chondrocyte pellets were dissolved in citrate-EDTA buffer (55 mM/5 mM; pH 6.8) for 10 min at 37 °C and centrifuged at 10 K rpm for 15 s. Then, the cell pellet was washed five times with PBS and resuspended in 200 μL of SDS-NuPAGE buffer for NuPAGE gel (Invitrogen, Grand Island, NY, USA) running. Immunoblotting was performed using monoclonal antibodies against Type Ⅰ collagen, Type Ⅱ collagen (1:1000 dilution; EMD Millipore, Billerica, MA, USA), MMP-13 (Abcam, Cambridge, MA, USA) TGF-β (1:1000 mg/mL; Santa Cruz Biotechnology, Inc., Dallas, TX, USA) and PPAR-γ (Abcam, Cambridge, MA, USA). The loading control, β-actin, will be detected using anti-β-actin antibody (1:10,000 dilution; Abcam, Cambridge, MA, USA). Secondary antibodies tagged horseradish peroxidase (HRP) (rabbit for TGF-β 1:20,000 dilution and mouse for type Ⅱ collagen and β-actin, 1:5000 dilution) was used. Proteins separated in the gel and the gel were transferred to nitrocellulose membrane (GE Healthcare Life Sciences, Pittsburgh, PA, USA) using TE77XP semidry blotter with 10 V for 3 h (Hoefer, Inc., Holliston, MA, USA). Protein band signals on blots were detected on Amersham Hyperfilm which was enhanced chemiluminescence (GE Healthcare Life Sciences, Pittsburgh, PA, USA) using SuperSignal West Pico Chemiluminescent Substrate kit (Thermo Fisher Scientific, Rockford, IL, USA).
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4

Western Blot Analysis of Signaling Proteins

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Forty micrograms of total protein were used for Western blot analysis. Protein expression levels were quantified after immunoblotting using a 1:1,000 dilution of the following specific antibodies: connecting tissue growth factor (CTGF; Cat. No. sc-25440, Santa Cruz Biotechnology), PAI-1 (Cat. No. SC-8979, Santa Cruz Biotechnology), TGF-β (Cat. No. SC-130348, Santa Cruz Biotechnology), COX-2 antibody (Cayman, Ann Arbor, MI, USA), mouse anti-phospho-p44/42 ERK1/2 (Thr202/Tyr204), and a rabbit anti-total ERK antibody (Cell Signaling Technology, Beverly, MA, USA). NOX-4 antibody was purchased from Santa Cruz (sc-21860). Antibodies against Anti-Smad2/3 antibody and anti p-Smad2/3 were obtained from Abcam (Abcam, Cambridge, MA, USA). Primary antibodies were followed by incubation with either donkey anti-rabbit or anti-mouse IgG IRDye 800 CW (Santa Cruz Biotechnology) at 1:3,000 dilutions. Resulting bands were compared to molecular weight standards (M. Biosources, San Diego, CA, USA). Densitometry was performed with ImageJ software and normalized to monoclonal anti-β-actin antibody (Cat. A2228, Sigma Chemical Co, St. Louis, MO, USA).
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5

Western Blot Analysis of Oxidative Stress

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Western blotting assay was conducted as previously described [10 (link)]. The primary antibodies were FN (1 : 200 dilution), TGF-β (1 : 1000 dilution), 3-NT (1 : 1000 dilution), 4-HNE (1 : 1000 dilution), IL-6 (1 : 500 dilution), NF-κB (1 : 1000 dilution), IκB-α (1 : 1000 dilution), Nrf2 (1 : 500 dilution), actin (1 : 3000 dilution), and α-tubulin (1 : 2000 dilution), all of which were purchased from Santa Cruz Biotechnology except for 3-NT (Millipore), 4-HNE (Alpha Diagnostic), and TGF-β, NF-κB, IκB-α, and α-tubulin (Cell Signaling).
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6

Western Blot Analysis of Extracellular Matrix Proteins

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Cells were lysed on ice for 20 min using a lysis buffer and centrifuged at 14,000 ×g for 10 min at 4°C. For sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), samples were transferred onto nitrocellulose membranes and the membranes were blotted with appropriate primary antibodies at a dilution of 1:1000. The membranes were then treated with peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA). Bound antibodies were detected with Super Signal West Pico PLUS Chemiluminescent Substrate (ECL; Amersham, Arlington Heights, IL, USA) and developed with Kodak X-OMAT films (Kodak, New Haven, CT, USA). Primary antibodies used in this study were COL-1A (ab34710; Abcam, Cambridge, UK), α-SMA (ab5694; Abcam, Cambridge, UK), fibronectin (sc-69681; Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), TGF-β (sc-130348; Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), and GAPDH (ATGEN, Seongnam-si, Gyeonggi-do, South Korea) antibodies.
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7

Renal Fibrosis Histopathological Analysis

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Paraffin-embedded sections were used for histologic and IHC staining. Changes in renal morphology were examined by H&E staining. Matrix deposition within the interstitium was assessed using Masson’s trichrome staining. For IHC staining, kidney slides were incubated in citrate buffer (pH 6, heated to 99°C) for epitope retrieval and 0.3% hydrogen peroxide to block endogenous peroxidase activity. After preincubation with 10% protein block (Dako) to block nonspecific binding of antibodies, the tissues were incubated overnight at 4°C with primary antibodies against COL-1 (Abcam, 34710), α-SMA (MilliporeSigma, A2547), FN (Abcam, 45688), COL-4 (Abcam, 6586), COL-3 (Abcam, 7778), CXCR4 (Santa Cruz Biotechnology, sc-53534), TGF-β (Santa Cruz Biotechnology, sc-130348), and LOXL2 (Santa Cruz Biotechnology, sc-66950). Slides were then washed and incubated with secondary antibodies EnVision+System-HRP Labelled Polymer Anti-rabbit (Dako, K4003) and EnVision+System-HRP Labelled Polymer Anti-mouse (Dako, K4001). After washing with TBS-Tween 20, kidney sections were covered with DAB (Dako) for 10 minutes to produce a brown color. Ten randomly chosen fields of kidney cortex were captured per mouse, and staining was quantified as percentage of total area, using ImageJ.
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8

Protein Expression Analysis in LV Lysates

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LV lysates were prepared in RIPA buffer, separated by SDS‐PAGE and transferred to PVDF membranes. The membranes were blocked using either 5% non‐fat dry milk or 5% BSA in TBST. The membranes were then incubated overnight with antibodies against ATM, TGF‐β, Bax (Santa Cruz), MMP‐9 (Millipore), Bcl‐2, p‐Akt (ser‐473), or p‐GSK‐3β (ser‐9) (Cell Signaling). GAPDH (Santa Cruz) immunostaining or Ponceau‐S staining was used as the protein‐loading control. Band intensities were quantified using Kodak photo documentation system (Eastman Kodak Co).
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9

Immunoblotting analysis of CK effects

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Based on Koo et al.’s paper [26 (link)], cells (1x106 cells/mL) were treated with various concentrations of CK for 24 h, followed by a general immunoblotting method. Isolated proteins were transferred to a Hybond ECL transfer membrane for detection with antibodies for PARP, Caspase-3, p-STAT3 (Tyr705), p-STAT3 (ser727), STAT3 (Cell signaling Technology, Beverly, MA, USA), PD-L1, c-Myc (Abcam, Cambridge, UK) and VEGF, TGF-β, Cyclin D1, Bcl-xL (Santa Cruz Biotechnology, Dallas, TX, USA) and β-actin (Sigma, St. Louis, MO, USA).
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10

Western Blot Analysis of Biomarkers

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A standard Western blotting protocol was used as described previously [5 (link),25 (link)] with antibodies against TGFβ (1:600), matrix metalloproteinase 2 (MMP2, 1:200) (Santa Cruz, CA, USA); connective tissue growth factor (CTGF, 1:500) (Biovision, Mountain View, CA, USA), LOX-1 (1:1000) (R&D System), bone morphogenetic protein-7 (BMP-7, 1:5000) (AbDSerotec, Minneapolis, MN, USA), nuclear factor-kappa B (NFκB, 1:1000), its inhibitor kappa B alpha (IκBα, 1:200), Phospho-P38 (1:1000) (Millipore, Billerica, MA, USA), NADP(H) oxidase subunit Gp91phox (1:500, BD Transduction Laboratories, France). Loading controls were β actin (1:3000, Sigma Aldrich, France) or P38 (1:1000, Millipore). Appropriate HRP-coupled secondary antibodies (1:5000 to 1:10 000, GE Healthcare, France) were used to detect the band by chemiluminescence with ECL plus (GE Healthcare, France). Intensities of the protein bands were determined and quantified using AlphaEase FC software (Alpha Innotech Corporation, San Leandro, CA).
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