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Dab chromogen

Manufactured by Agilent Technologies
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DAB chromogen is a chemical compound used in immunohistochemistry and other related laboratory techniques. It is a common substrate for the detection of enzyme-labeled antibodies, producing a brown stain in areas where the target antigen is present.

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169 protocols using dab chromogen

1

Immunohistochemistry of Ewing Sarcoma

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Formalin-fixed paraffin-embedded samples were collected at the Institute of Pathology of the LMU Munich57 (link). We harvested at least two cores per sample with a core-diameter of 1 mm from all blocks to construct tissue microarrays. All EwS samples showed cytogenetic evidence for a translocation of the EWSR1 gene either as determined by fluorescence in situ hybridization and/or qRT-PCR. The samples were reviewed by a reference pathologist. Four-micrometer sections were cut for immunohistochemistry and antigen retrieval was performed with microwave treatment using the antigen retrieval ProTaqs I Antigen-Enhancer (Quartett) for p-MYBL2 or the Target Retrieval Solution (Agilent Technologies) for cleaved caspase 3. In total, 7.5% aqueous H2O2 solution (room temperature) and blocking serum from the corresponding kits were used for 20 min for blockage of endogenous peroxidase. Then slides were incubated for 60 min with the primary antibodies anti-p-MYBL2 (1:100 dilution; Abcam, ab76009) and anti-cleaved caspase 3 (1:100 dilution, Cell Signaling, #9661). Afterwards slides were incubated with a secondary anti-rabbit IgG antibody (MP-7401, ImmPress Reagent Kit, Peroxidase-conjugated) followed by subsequent target detection using DAB+chromogen (Agilent Technologies). Slides were counterstained with hematoxylin Gill’s Formula (H-3401; Vector).
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2

Hyaluronic Acid-Based Theranostic Nanoparticles

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Sodium hyaluronate (0.48 MDa) was purchased from Bioland, Korea. 5ß-cholanic acid (CA), Formamide and Pyrene was purchased from Sigma Aldrich, USA. Fluorescent probe FlammaFCI-774 (F774) and FlammaFCR-552 (F552) were obtained from BioActs, Korea. 1-Ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC), N-hydroxysuccinimide (NHS) and dicyclohexylcarbodiimide (DCC) were purchased from Sigma Aldrich, USA. N-N dimethyl formamide was purchased from Merck, Germany. 3-(4, 5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium) (MTS) was purchased from Promega, USA. Losartan potassium(Sigma Aldrich, USA), Angiotensin 2 human Sigma Aldrich, USA), Anti alpha smooth muscle actin antibody (abcam,Cambridge,UK),Donkey Anti-Rabbit IgG H&L (Alexa Fluor® 488) (abcam,Cambridge,UK), Goat anti-rabbit IgG (HRP) (abcam,Cambridge,UK), DAB chromogen (Dako, Agilent Technologies, Denmark). FL83B cell line was purchased from ATCC (Manassas,USA) and hHSC from ScienCell Research Laboratories (CA,USA). Hydroxyproline Assay kit (Chondrex,WA,USA). RPMI-1640 and Dulbecco’s modified Eagle’s medium (DMEM) were purchased from Thermo Scientific, USA. All other reagents were of analytical or chromatographic grade.
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3

Fdx1 Expression in Ovarian Cancer

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The OC tissue specimens resected from 45 patients (date range: 04/2015~03/2019; age distribution: 39~75) at Kobe University Hospital (Kobe, Japan) were fixed with 10% (v/v) formalin at room temperature for 48 h and embedded in paraffin. Cylindrical tissue cores (2 mm) were then extracted from each paraffin block and re-embedded into a single paraffin block to create a tissue microarray (TMA) for sectioning. Epithelial OC cases were selected from the TMA and classified into platinum-sensitive and platinum-resistant groups according to their clinical course. The resultant TMA sections were incubated with antibody against Fdx1 (1:200; cat. no. 12592-1-AP; Thermo Fisher Scientific, Inc.) overnight at 4°C and then with anti-Rabbit IgG antibodies conjugated with HRP-labeled polymer (ImmPRESS Reagent kit Peroxidase; Vector Laboratories, Inc.) for 30 min at room temperature. Secondary antibodies were visualized using DAB Chromogen (Dako; Agilent Technologies, Inc.), and nuclei were counterstained with hematoxylin. The specimens were observed under a BZ-X700 microscope (Keyence Corporation). Clinical tissue specimens were obtained by opt-out method and analyzed in accordance with procedures approved (approval nos. B200076 and B220122) by the Institutional Review Board of Kobe University Hospital (Kobe, Japan).
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4

Immunodetection of Nitrotyrosine in Lung Tissue

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Deparaffinized lung tissue sections were subjected to antigen retrieval then immunostained with a murine anti-nitrotyrosine monoclonal antibody (Abcam, ab7048, Cambridge, UK) or a nonspecific isotype control antibody (Abcam ab18469). Bound antibody was detected with Mouse on Mouse Polymer HRP (BioCare Medical, Pacheco, CA) and DAB+ Chromogen (Agilent Dako, Santa Clara, CA). Slides were counterstained with hematoxylin. Additional details are provided in an online data supplement.
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5

Immunohistochemical Analysis of Factor VIII

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Cell climbing slices were made using HemECs at sixth passage and then treated with paraformaldehyde for 30 min at room temperature. The cells were treated with 5% normal goat serum (Abcam, Cambridge, UK) for 10 min at rrom temperature and incubated with anti-factor VIII primary antibody (1 mg/ml; cat. no. ab6190; Abcam) at 4°C overnight. Following three washes in PBS, sections were incubated with streptavidin-peroxidase (S-P)-conjugated secondary antibodies. The cells were visualized using DAB-chromogen (Dako; Agilent Technologies, Inc., Santa Clara, CA, USA) according to the manufacturer's protocol. Then after gradient alcohol treatment, the cells were treated with dimethylbenzene for 1 min and sealed with neutral resin. Cells were observed using converted microscope at a magnification of ×400. Yellow-stained particles indicate the presence of clotting factor VIII.
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6

Optimizing IHC Antibody Staining Protocols

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For the antibodies not already conjugated to metals by the manufacturer, the antibodies performances and optimal antigen retrieval conditions were assessed by chromogenic immunohistochemistry (IHC). Tissue sections were deparaffinized and rehydrated with xylene and decreasing concentrations of ethanol. Sections were boiled for 20min in Tris-EDTA (10 mM/1 mM, pH 9) buffer for antigen retrieval, followed by endogenous peroxidase blockade using a 0.3% H2O2 solution for 5min and non-specific antibody binding blockade with 3% TBS BSA solution for 30min. Tissues were incubated overnight at 4°C with the primary antibody. Following washes in PBS, tissues were incubated with a secondary antibody coupled to horseradish peroxidase (Polink-1 HRP for Rabbit & Mouse - GBI Labs Kit/AffiniPure Goat Anti-Rat IgG -112-005-143, Jackson/AffiniPure Donkey Anti-Goat IgG - 705-005-003, Jackson) for 1h at room temperature. Antibody binding was detected with DAB+ chromogen (DAKO, Agilent technologies, Santa Clara, Ca, USA) and the sections were counterstained with hematoxylin (Thermo Fisher Scientific, Waltham, Massachusetts, USA), before dehydration and mounting of the slides. The specificities and intensities of the immunostaining were assessed by a pathologist.
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7

Quantifying Tumor Cell Proliferation in Mice

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Mouse subcutaneous tumors were collected following euthanasia. Subsequently, tissue sections (4-µm) were dewaxed with xylene (twice) for 10 min and hydrated using a descending alcohol series (100% twice, 90% twice, 75% twice) for 3 min at room temperature. Antigens were retrieved in a 95°C water bath for 20 min. Endogenous peroxidase activity was blocked using 3% hydrogen peroxide for 20 min at room temperature. After blocking with 5% BSA (Sigma-Aldrich; Merck KGaA), the sections were incubated with primary antibody (Ki-67, 1:200; cat. no. 9027S; Cell Signaling Technology, Inc.) at 4°C overnight. The next day, sections were incubated with secondary antibody (1:200; cat. no. ZDR-5306; OriGene Technologies Inc.) for 2 h at 37°C, followed treating with DAB Chromogen (1 drop of the DAB Chromogen per ml of substrate buffer; Dako; Agilent Technologies, Inc.) and hematoxylin (cat. no. C0107; Beyotime Institute of Biotechnology) for 2 min at room temperature. Finally, the slides were dehydrated and fixed by resin and observed with an Olympus inverted microscope (Olympus Corporation; magnification, ×200).
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8

Immunohistochemical Analysis of PED Expression

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For immunohistochemistry, 4 μm slides obtained form the TMA were stained with a polyclonal sheep PED antibody (AF5588, R&D System, Minneapolis, USA) using the Dako Real Detection System (Agilent Technologies, Santa Clara, CA, USA). In brief, sections were first blocked with Dako Envison FLEX/Peroxidase-Blocking Reagent for 5 min and stained thereafter with primary anti-PED antibody (1:50) for 30 min. After washing, biotinylated secondary antibody was added (anti-sheep IgG, Vector Laboratories, Burlingame, CA, USA; BA-6000, dilution 1:1000) and detected using streptavidin-horseradish peroxidase conjugate (Agilent Technologies) and DAB+ Chromogen (Agilent Technologies). PED cytoplasmic staining intensity was evaluated by a board-certified pathologists with expertise in hepatopathology (MSM) and graded semi-quantitatively into: 0 for negative staining, 1+ for weak positive staining, 2+ for moderate positive staining and 3+ for strong positive staining, as shown representatively in Supplementary Figure 1. The h-score was calculated by multiplying staining intensity with percentage of positive tumor cells.
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9

Immunohistochemical Analysis of Tumor Spheroids

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Sections (4µm) of paraffin-embedded multicellular tumor spheroids were made; after deparaffinization and rehydration, these were used for immunohistochemical staining for Ki67 (1:1600, clone D2H10, Cell Signaling) and cleaved caspase 3 (Cleaved caspase 3 (Asp175), 1:800, Cell Signaling). Antigen retrieval was performed by incubating sections in citrate buffer (10 mM, pH 6) for 10 min and cooling down for 2 h. Sections were incubated with primary antibody overnight at 4 °C. The next day, sections were incubated with the BrightVision one step detection system poly-HRP anti-mouse/rabbit (VWRKDPVO110HRP, Immunologic, WellMed B.V., Duiven, The Netherlands) for 30 min at room temperature. Sections were washed with PBS and DAB+ Chromogen (K3468, Dako, Agilent Technologies, Carpinteria, CA, USA) was added to each slide for 10 min. Slides were counterstained with hematoxylin, dehydrated, and mounted. For quantification of the stained sections, the percentage of Ki67 or cleaved caspase 3 positive cells was determined using QuPath Software v.0.2.3 on three different sections on each slide [47 (link)].
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10

Immunohistochemical Analysis of Tumor Specimens

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Tumors were fixed in 4% paraformaldehyde for 48 h at 4 °C before processing for paraffin embedding. All IHC were performed in technical duplicates on 5-µm tumor sections. After being submitted to antigen retrieval with either citrate buffer at pH 5.7 or Tris-EDTA buffer at pH 9, depending on the antibody manufacturer’s instructions, sections were incubated in BSA 5% in TBS/Triton 0.05% to block non-specific binding, then overnight at 4 °C with primary antibodies for CAIX (Novus Bio, NB100-417), CD31 (Cell Signaling, 77699), CD36 (Sigma-Aldrich, HPA002018), CPT1a (Abcam, ab234111), (GLUT1 (Proteintech, 21829-1-AP), MCT1 (Proteintech, 20139-1-AP), and MCT4 (Sigma-Aldrich, HPA021451). These primary antibodies were revealed with Envision peroxidase-conjugated anti-rabbit secondary polymer antibody and DAB chromogen (Dako-Agilent, Santa Clara, CA, USA). Sections were eventually counterstained with hematoxylin (Dako-Agilent). Stained slides were then digitalized using a SCN400 slide scanner (Leica Biosystems, Buffalo Grove, IL, USA) at 240× magnification and subjected to blind analysis to obtain the percentage of stained tissue using Visiopharm software.
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