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70 protocols using halocarbon oil 27

1

Live Imaging of Drosophila Embryo Development

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To collect Drosophila embryos for live imaging, males and females of the desired genotype were added to a plastic cage covered with apple juice agar plates and left for at least 3 days at 25°C. On the day of imaging, a fresh plate was added to the cage, and embryos were collected for two hours. After removing the plate, embryos were coated with Halocarbon oil 27 (Sigma) for staging using a dissection scope with transillumination, then stage-selected embryos were placed on a 2 in × 2 in paper towel square and dechorionated in 50% bleach for 1 min. Bleach was wicked off with a Kimwipe after 1 min, the square was washed with a small amount of distilled water, and excess water was wicked off. Dechorionated embryos were secured onto a semipermeable membrane (Lumox film, Starstedt) on a membrane slide holder using Heptane Glue. These embryos were mounted in Halocarbon oil 27 (Sigma) between the membrane and a coverslip. Live imaging was performed on a Zeiss LSM880 Airy Scan microscope (Airy Fast mode) with a 63X oil immersion objective at room temperature.
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2

Live Embryo Imaging Protocol

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For live time-lapse experiments, embryos of the genotype sqhAX3;sqhGFP; UbiRFP were dechorionated in 50% bleach and extensively rinsed in water. Stage 10 embryos were manually aligned and attached to heptane-glue-coated coverslips and mounted on custom-made metal slides; embryos were covered using halocarbon oil 27 (Sigma-Aldrich) and viability after imaging after 24 h was controlled prior to further data analysis. Time-lapse sequences were imaged under a 40×/1.3NA oil objective on an inverted Zeiss 780 Laser scanning system, acquiring z-stacks every 0.58-3 min with a typical voxel xyz size of 0.22×0.22×1 μm. Z-stack projections to generate movies were assembled in ImageJ or Imaris. The membrane channel images from time-lapse experiments were denoised using nd-safir software (Boulanger et al., 2010 (link)).
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3

Imaging Embryos and Junctional Signals

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Embryos were dechorionated 1 min in 50% bleach, washed in water, mounted in halocarbon oil 27 (Sigma), and imaged with a Perkin Elmer Ultraview RS5 spinning disk confocal using Metamorph or Volocity software and a PlanApo 63x/1.4NA oil-immersion objective (Zeiss). For β-catenin:GFP, maximum intensity projections of a 1–4 μm region containing the junctional signal were analyzed. For Jupiter:mCherry, all slices containing microtubule signal were projected.
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4

Imaging and Analysis of Drosophila Embryo

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Unless otherwise indicated, all crosses were performed at 25°C. Stage 10 or 11 embryos were staged and aligned in Halocarbon oil 27 (Sigma-Aldrich) and then imaged at 25°C or 32°C with a spinning disk (Leica), with a 20× dry objective (numerical aperture: 0.4) and a camera (iXon3; Andor Technology) using the acquisition software MetaMorph (Molecular Devices). brkM68/FM7 females were crossed with Jupiter::GFP males. In addition, wild-type females were crossed with Jupiter::GFP males as controls. Brk mutant embryos were identified by the absence of spontaneous movements at stage 17 and confirmed by the absence of hatching. For every sample, the length and width over time were normalized with the maximal length or maximal width, respectively.
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5

Drosophila Embryo Microinjection Protocol

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All reporter plasmids were integrated into a unique landing site on the third chromosome using strain 9750 (Bloomington Drosophila Stock Center). In Figure S6, PP7-lacZ reporter plasmid was integrated into a unique landing site on the third chromosome using strain 9748 (Bloomington Drosophila Stock Center). Microinjection was performed as described (Ringrose, 2009 (link)). Zero to 1-hour embryos were collected and dechorionated with bleach. Aligned embryos were dried with silica gel for 12 min and covered with Halocarbon oil 27 (Sigma). Subsequently, microinjection was performed using Picospritzer III (Parker) and Narishige M-152 Micromanipulator (Narishige). Injection mixture contains 500 ng/μl plasmid DNA, 5 mM KCl ,0.1 mM phosphate buffer, pH 6.8. mini-White marker was used for subsequent screening.
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6

Imaging Epithelial Migration in Drosophila Ovaries

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One- to three-day-old females were aged on yeast with males for 1–2 days (control and Lar mutants) or overnight (fat2 mutants) before dissection. Ovaries were dissected as previously described (Prasad et al., 2007 (link)) in live imaging media (Schneider’s Drosophila medium containing 15% FBS and 200 μg/mL insulin) containing CellMask Deep Red Plasma Membrane Stain (ThermoFisher; 1:1000). Ovarioles were transferred to an agar pad (live imaging media with 0.4% NuSieve GTG low-melt agarose) formed on a gas permeable membrane slide (Sarstedt x-well) (Cetera et al., 2016 ). A 30 mm coverslip was placed on top of the sample, stabilized with silicon vacuum grease at each corner, and gently compressed. Halocarbon oil 27 (Sigma) was added around the coverslip to prevent evaporation. Egg chambers were imaged with a 40× 1.3 NA PlanApo objective on a laser-scanning confocal miscroscope (Zeiss LSM 880) controlled by LSM acquisition software. Time-lapse movies were performed for 10–20 minutes for control epithelia and 20–40 minutes for mutant epithelia. Single confocal slices were acquired near the basal epithelial surface every 20–30 seconds. To measure epithelial migration rates, kymographs were generated from time-lapse image stacks in Fiji (ImageJ) using the KymoResliceWide plugin (see Figure S1A for details). At least 5 egg chambers of each stage were measured.
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7

Visualizing Drosophila Embryo Spindle Dynamics

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Imaging was performed on a Visitron Systems Olympus IX81 microscope with a CSO-X1 spinning disk using a UPlanS APO 1.3 NA (Olympus) 60× objective. Embryos 1–2 hr old were manually dechorionated, aligned in heptane glue on 22 × 50 mm coverslips, and covered with a 1:1 mixture of Halocarbon oil 700 and Halocarbon oil 27) (Sigma). Imaging was performed with 400 ms exposure per slice, with five slices per stack and a constant room temperature of 22°C. Embryos were injected using an Eppendorf Inject Man NI 2 and Femtotips II needles (Eppendorf). The anti-DSpd-2 and anti-Dgt6 antibodies were suspended in injection buffer (100 mM HEPES, pH 7.4, and 50 mM KCl), centrifuged at 13,500 × g for 20 min, and injected at a concentration of either 6 mg/ml (anti-Dgt6 or anti-DSpd-2, high concentration) or 1 mg/ml (anti-DSpd-2, low concentration). For cold-treatment assays, single embryos were imaged until metaphase was reached, at which point they were placed in 50 mm ice-cold Petri dishes and covered with 4°C Halocarbon oil. Following 90 min on ice, embryos were reimaged, with 30 s typically expiring between removal from 4°C and the initiation of imaging. In some cases, embryos were removed following 75 min on ice, injected with antibody, and then placed on ice for another 15 min prior to imaging.
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8

Visualizing Embryonic Gene Expression

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MCP-GFP, His2Av-mRFP virgins were mated with homozygous males carrying the MS2 reporter gene. Resulting trans-heterozygote virgins were collected and mated with homozygous males carrying snail shadow enhancer. In Figure S1A and B, heterozygote MCP-GFP, His2Av-mRFP virgins were mated with homozygous males carrying snail shadow enhancer-evePr-MS2-lacZ reporter gene. The resulting embryos were dechorinated and mounted between a semipermeable membrane (In Vitro Systems & Services) and a coverslip (18 mm × 18 mm), and embedded in Halocarbon oil 27 (Sigma). Embryos were imaged using a Zeiss LSM 880 at room temperature. Plan-Apochromat 40x / 1.3N.A. oil immersion objective was used. At each time point, a stack of 21 images separated by 0.5 μm was acquired and the final time resolution is 13 sec. Images were captured in 16 bit. For each cross, three biological replicates were taken using the same setting of the microscope. The same laser power and microscope setting were used throughout this study.
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9

Embryonic Development at Varying Temperatures

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Embryos were reared in collection cups at 18°C or 32°C, following the scheme shown in Table S1. Late cellularization-stage embryos were hand-selected under a dissecting microscope, transferred to fresh apple juice plates, covered in Halocarbon oil 27 (Sigma Aldrich, St. Louis, MO), and incubated at 22°C in humidifying chambers (80×15 mm glass Petri dish lined with moist paper towels). After 48 hours plates were scored for the percent of hatched larvae.
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10

Live Imaging of Drosophila Embryonic Development

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Live imaging was performed as described previously (Carvalho et al., 2018 (link)). Dechorionated stage 15 embryos were mounted on their ventral side on glass-bottomed culture dishes (MatTek) with embryo glue (double-sided tape diluted in heptane) and covered with halocarbon oil 27 (Sigma-Aldrich). Embryos were wounded as described above for the wounding assay except that the laser power was lower in order to inflict smaller wounds that are able to close during the imaging procedure.
Time-lapse microscopy of transgenic embryos was performed at 25°C on a Nikon/Andor Revolution XD spinning-disk confocal microscope with a 512 EMCCD camera (iXon 897) with a 60× Plan Apochromat VC PFS 1.4 NA oil-immersion objective or a 60× Plan Apochromat VC PFS 1.2 NA water-immersion objective (Nikon) and using the iQ software.
Individual z slices with a step size of 0.28 µm, (Figs 2, 3 and 4; Figs S1 and S3I–J), 0.36 µm (Fig. 7, Fig. S2) or 0.5 µm (Figs 5 and 6; Fig. S3A,B,E,F), were acquired for a single time point or every 30 s, 2 min, 2.5 min or 10 min for 30–160 min. For F-actin, myosin, E-cad and Rho effectors imaging, Z stacks were acquired with frame averaging of 2. For mitochondrial morphology quantification, images were acquired with frame averaging of 4.
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