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13 protocols using glutathione (gsh)

1

Purification of GST and His Fusion Proteins

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To purify GST and His fusion proteins, E. coli BL21 (DE) cells transformed with GST or His-tagged constructs were induced at an optical density 600 (OD600) of 0.6–0.8 with 0.2 mM isopropyl-β-δ-thiogalactopyranoside for 2–5 hr at 30° C. Cellular extracts were made by sonication and clarified at 10,000 × g for 20 min. GST fusion proteins were purified by binding to glutathione-conjugated beads and eluted with reduced glutathione (GE Healthcare). His fusion proteins were purified by binding to Ni-NTA agarose beads (QIAGEN) and then eluted with 300 mM imidazole.
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2

Co-Immunoprecipitation and GST Pulldown Assays

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Cell pellets or tissues were homogenated with TNEN buffer (50 mM Tris-HCl 8.0, 150 mM NaCl, 5 mM EDTA and 1% NP-40) with protease inhibitors (Roche, USA) and phosphatase inhibitors (Roche, USA) and centrifuged at 14,000 × g for 10 min at 4 °C. For co-immunoprecipitation, the supernatant was mixed indicated antibodies overnight at 4 °C and then with 20 μl Protein G Dynabeads (Life technologies, Carlsbad, CA) for 2 h at 4 °C. For GST pulldown, GST, or GST-tagged proteins were precipitated for 2 h at 4 °C with Glutathione Sepharose (GE, Milwaukee, WI), and eluted with 10 mM Glutathione reduced solution following three times washing with TNEN buffer. Proteins were separated by SDS-PAGE gel and transferred to PVDF membranes. After blocking, membranes were probed with various primary antibodies and then HRP-linked secondary antibodies. Signals were detected using the ECL method.
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3

Purification of FIP5 and CGN Proteins

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Full-length 6His-FIP5 and 6His-CGN were produced in baculovirus using the transfer vector pVL1392 (ref. 8 (link)). In brief, 106 Sf9 cells were seeded into a six-well plate, and the Bacfectin–DNA mixture was added dropwise. After 5 days, the P1 viral stock was harvested and further amplified to P2 and P3 stages. For protein production, 1 l of Sf9 cells at 2 million cells per ml was infected with 2 ml of P3 viral stock (approximate MOI of 0.5) and harvested after 65 h. Cells were lysed in 50 mM Tris buffer, pH 7.5, containing 300 mM NaCl, and the cleared lysate was loaded onto a Ni-NTA column. Eluted 6His-FIP5 or 6His-CGN was dialysed overnight against buffer (50 mM Tris, pH 7.5, 300 mM NaCl and 5 mM BME) and frozen in liquid nitrogen. Yields were typically 3–5 mg l−1 with an estimated purity of >75%. GST-CGNaa1-406, GST-CGNaa355-579, GST-CGNaa571-794 and GST-CGNaa781-1025 fragments were expressed using the pGEX-4T plasmid (provided by Sandra Citi18 (link)) and purified using the BL21-(FE3) RIPL Escherichia coli strain8 (link). Briefly, E. coli were lysed using a French press and then incubated with glutathione agarose beads (Sigma-Aldrich). Beads were then washed with PBS and the GST-protein was eluted with 25 mM glutathione (GE Healthcare). Final protein concentrations were determined using Bradford protein assay (Bio-Rad Laboratories).
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4

Recombinant Expression and Purification of CDK4, Cyclins

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Recombinant GST-CDK4 and GST-cyclin D1 were expressed in E. coli by IPTG induction and purified by FPLC chromatography as described previously 45 (link).
Recombinant GST-cyclin A, GST-cyclin E and GST-cyclin Y were expressed in E. coli (BL21 DEA3) following induction with 1 mM IPTG overnight at 20 °C and purified by FPLC chromatography on a GSTrap HP 5 mL column (GE Healthcare) equilibrated in buffer A (50 mm Phosphate, pH 7.4, 150 mM NaCl). GST-tagged proteins were eluted with buffer A containing 50 mM glutathione (Euromedex), and then further injected onto a desalting column (GE Healthcare) equilibrated in buffer A to eliminate free glutathione. All proteins were expressed and purified freshly and their purety was verified by SDS-PAGE.
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5

Purification of GST and His Fusion Proteins

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To purify GST and His fusion proteins, E. coli BL21 (DE) cells transformed with GST or His-tagged constructs were induced at an optical density 600 (OD600) of 0.6–0.8 with 0.2 mM isopropyl-β-δ-thiogalactopyranoside for 2–5 hr at 30° C. Cellular extracts were made by sonication and clarified at 10,000 × g for 20 min. GST fusion proteins were purified by binding to glutathione-conjugated beads and eluted with reduced glutathione (GE Healthcare). His fusion proteins were purified by binding to Ni-NTA agarose beads (QIAGEN) and then eluted with 300 mM imidazole.
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6

Enzymatic Characterization of ObCAAT and ObEGS

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Full-length ORFs encoding ObCAAT1, ObCAAT2, and the sweet basil eugenol synthase gene (ObEGS1) were cloned into pDEST™20 (Thermo Fischer) to generate the glutathione S-transferase (GST)-fused protein. pDESCAAT1, pDESCAAT2, and pDESEGS1 constructs were transformed into E. coli BL21 (DE3) by the heat shock method. Expression was induced by adding 1 mM isopropyl-β-d-thiogalactopyranoside (IPTG) followed by incubation at 16 °C for 12 h for ObCAAT1 and ObCAAT2. For ObEGS1, 0.4 mM IPTG was used for induction at 37 °C for 2 h. Recombinant protein was purified using glutathione–Sepharose beads (GE Healthcare) by affinity chromatography according to the manufacturer’s instruction using 20 mM glutathione (GE Healthcare). Coupled reactions involving ObCAAT1 and ObEGS1 and ObCAAT2 and ObEGS1 were determined independently in 100 mM MES KOH buffer (pH 6) using coniferyl alcohol as substrate as previously described by Dexter et al. (2007) (link). The reaction mixtures comprised coniferyl alcohol (400 μM), acetyl-CoA (250 μM), NADPH (400 μM), and purified ObCAAT1 or ObCAAT2 and ObEGS1 (5 μg) in autonomous reactions carried out for 60 min at room temperature. A similar in vitro coupled reaction was repeated with GST alone in place of ObCAAT as a negative control.
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7

Purification and binding assay of GST-NHSL1

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GST and MBP fusion proteins were purified from BL21-CodonPlus (DE3)-RP E. coli (Stratagene) using glutathione (GE Healthcare) or amylose (New England Biolabs, Inc.) beads. Purified GST-NHSL1 fragments were separated on SDS-PAGE and transferred onto PVDF membranes, blocked in 5% BSA/TBS-T and overlayed with 10 μg/ml of purified MBP, MBP-Abi full-length or MBP-Abi-delta-SH3 in 5% (w/v) BSA, TBS-T and MBP were detected with 1:10,000 MBP antibodies in 5% BSA/TBS-T, E8032S (New England Biolabs).
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8

Purification and Interaction Analysis of GST-NHSL1 and Abi Proteins

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GST and MBP fusion proteins were purified from BL21-CodonPlus (DE3)-RP E.
coli (Stratagene) using glutathione (GE Healthcare) or amylose (New England Biolabs, Inc.) beads. Purified GST-NHSL1 fragments were separated on SDS-PAGE and transferred to PVDF membranes and overlayed as described previously 40 with purified MBP-Abi full-length or MBP-Abi-delta-SH3, and MBP was detected with MBP antibodies (New England Biolabs).
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9

CAPN5 and SLIT2 Interaction Analysis

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Western blotting analysis and immunoprecipitation was performed as described. 21 In brief, cell lysates were incubated overnight at 48C with anti-CAPN5 antibody or anti-SLIT2 antibody or with nonimmune rabbit or mouse IgG controls. Immunoprecipitations were then captured with protein G-Sepharose beads for 2 hours at 48C and eluted with 10 mM glutathione according to manufacturer's instructions (GE Healthcare, Shanghai, China). The cells were transfected with pSin CAPN5-Flag or pSin CAPN5 R289W vector for 60 hours, and cell lysates were incubated with anti-Flag M2 antibody conjugated with magnetic beads (Sigma-Aldrich Corp., St. Louis, MO, USA) for 2 hours at 258C. Immunoprecipitates were then separated with a magnetic shell and eluted according to the manufacturer's instructions (Sigma-Aldrich Corp.).
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10

GST Pull-Down Assay for Siah2-PHD3 Interaction

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For GST pull down assay, GST-Siah2 SBD was allowed to bind to glutathione sepharose beads (GSH) (GE Healthcare) for 30 min at 4°C in binding buffer containing 50 mM Tris-HCl (pH 8), 150 mM NaCl, 1 mM DTT, 5% glycerol, 0.1% Triton X-100. Cell lysate from HEK293T cells transfected with HA-PHD3 was incubated with the GST-Siah2 fusion proteins, immobilized on glutathione sepharose beads, for 1 hour at 4°C. GST alone was used as a control. After binding, the resin was washed three times in binding buffer, and then heated in Laemmli sample buffer for 5 min at 95°C. Samples were separately resolved in 12% PAGE and western blotted using an anti-HA antibody.
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