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7 protocols using tecnai g2 polara microscope

1

Cryo-EM Imaging of GroEL-GroES Complex

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The experimental GroEL and GroEL/ES dataset were obtained in [8 (link)]. To collect the GroEL14GroES7, 1 μM GroEL14 and 5 μM GroES7 were incubated in a buffer for 15 min at 30C, which contained 5mM MgCl2, 5mM KCl, 5 mM ADP, 1mM DTT, and 12.5 mM Hepes (pH 7.5). 3.5 μl of protein solutions were confused with 0.5 μl of a 10 nm BSA-colloidal gold suspension using mesh grids. The sample was vitrified with plunge-freezing. The single-axis tilt series were obtained by a Tecnai G2 Polara microscope, which was equipped with 2k ×2k FEI CCD camera. The tilt series were acquired from tilt angle ±65 with 2 or 2.5 angular increment at a different defocus levels between 7 and 4 μm. The object pixel size was 0.6nm.
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2

Cryo-EM Imaging of Tau Filaments

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Before making cryo-grids, the heparin-induced assembly reactions were centrifuged at 100,000 g for 30 min at 4°C. The resulting pellets were resuspended in 20 mM Tris, pH 7.4, 100 mM NaCl. Pronase-treated tau filaments (3 μl, at 2.0 mg/ml) were applied to glow-discharged holey carbon grids (Quantifoil Au R1.2/1.3, 300 mesh), blotted with filter paper and plunge-frozen in liquid ethane using an FEI Vitrobot Mark IV. For 2N4R filaments, imaging was performed on an FEI Tecnai G2 Polara microscope operating at 300 kV using a Falcon III detector prototype in integrating mode. A total of 717 movies of 30 frames was recorded during 1.0 s exposures, at a pixel size of 1.38 Å on the specimen, and a total dose of approximately 48 e/Å2. Defocus values ranged from −1.7 to −2.8 μm. For 2N3R filaments, imaging was performed on a Gatan K2-Summit detector in counting mode, using an FEI Titan Krios at 300 kV. A GIF-quantum energy filter (Gatan) was used with a slit width of 20 eV to remove inelastically scattered electrons. A total of 2051 movies of 44 frames was recorded during 11 s exposures, at a pixel size of 1.04 Å on the specimen, and a total dose of 50 electrons per Å2. Defocus values ranged from −0.8 to −2.2 μm. Further details are presented in Table 1.
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3

Cryo-EM Imaging of Lentiviral Particles

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A 3-μl aliquot of purified LV virions (∼1 mg ml−1) was applied to a freshly glow-discharged 400-mesh holey carbon-coated copper grid (C-flat, CF-2/1-2C; Protochips Inc.) and blotted for 3 s, in 70% relative humidity for plunge-freezing (Vitrobot; FEI) in liquid ethane. Cryo-EM data were collected using an FEI Tecnai G2 Polara microscope (FEI) operated at 300 kV, equipped with an energy filter (GIF Quantum; Gatan, Pleasanton, CA) operating in zero-loss mode (20 eV energy selecting slit width) and a direct electron detector (K2 Summit; Gatan). Micrographs were collected with a defocus between 1.5 and 3 μm as movies (25 frames, each 0.2 s) in single electron counting mode using SerialEM52 (link) at a calibrated magnification of × 37,027, resulting in a pixel size of 1.35 Å.
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4

Cryo-EM Analysis of Chaperone-Usher Pili

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A 3 μL sample of type 1 chaperone-usher pili was applied to a glow-discharged Quantifoil 1.2/1.3 400 mesh grid (Agar Scientific) and incubated for 30 s before being blotted and plunged into liquid ethane using a Vitrobot plunge-freezing device (FEI). The data were collected on a Tecnai G2 Polara microscope (FEI) operated at 300 kV equipped with a K2 Summit direct electron detector (Gatan) operated in counting mode, placed at the end of a Quantum energy filter operated with a slit width of 20 eV, with a 1.13 Å pixel size and a defocus range of -0.5 to -3.5 μm. A total dose of 100 electrons/Å2 was applied and fractionated equally among 59 frames to allow for dose weighting.
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5

Cryo-EM Imaging of DONV Virions

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A 3.5-μL aliquot of purified DONV virions (4 mg/mL) was applied to a freshly glow-discharged 200-mesh holey carbon-coated copper grid (C-flat, CF-2/1-2C; Protochips). Grids were blotted for 3 s in 100% relative humidity for plunge freezing (Vitrobot; FEI) in liquid ethane. Cryo-EM datasets were collected at 300 kV with an FEI Tecnai G2 Polara microscope (FEI), equipped with a direct electron detector (K2 Summit; Gatan). Movies (30 (link) frames, each 0.2 s, total dose 35 e Å−2) were recorded with a defocus between 1.5 and 2.5 μm in single-electron counting mode using SerialEM (53 (link)) at a calibrated magnification of 59,000×. This resulted in a pixel size of 1.35 Å.
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6

Cryo-EM Imaging of Polymerized C9

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Monomeric C9 was polymerized by overnight incubation at 1 mg ml−1 and 37 °C. The resulting poly-C9 was applied to lacey carbon-coated copper grids (Agar, UK) and frozen with a FEI Vitrobot Mark III (FEI, Eindhoven) at 22 °C and 100% humidity. Images were recorded manually on a Tecnai G2 Polara microscope (FEI) operating at 300 kV with a Quantum energy filter and K2 Summit detector (Gatan, UK) in counting mode, at a pixel size of 2.76 Å. Exposures were recorded at 1.2 electrons (Å2)−1 s−1 for 25 s, with defocus values ranging from 1.2 to 4.9 μm (Supplementary Fig. 3).
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7

3D Reconstructions of Suilysin Prepore and Pore

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For 3D reconstructions of the prepore and the pore, 1 μl of 0.3–0.5
mg/ml solution of either wild-type or disulphide-locked suilysin was incubated
with 1 μl of liposomes for 10 min at 37°C. Liposomes were then applied
to lacey carbon-coated copper grids (Agar Scientific, Stansted, United Kingdom)
and frozen using Vitrobot Mk3 (FEI) at 22°C and 100% humidity. Images were
collected on a Tecnai G2 Polara microscope (FEI) at 300 kV, on a Gatan 4k ×
4k CCD camera giving a final pixel size of 2 Å, at an electron dose of
20–25 e/Å2.
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