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7 protocols using cyp7a1

1

Liver Tissue Protein Analysis

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The protein concentration was determined in the supernatant of liver tissue. The samples with equal amounts of protein were analyzed for Phospho-Tyr705-STAT3 (Cell signaling Technology, Boston, MA), Phospho-217-C/EBPβ (Santa Cruz Biotechnologies, CA, USA), PGC-1α (Abcam plc, Cambridge, UK), Phospho-Ser32-IқBα (Cell signaling Technology, Boston, MA), PPARα (Santa Cruz Biotechnologies, CA, USA), ABCG5 (Santa Cruz Biotechnologies, CA, USA), ABCG8 (Novus Biological, Littleton, USA), CYP7A1 (Abcam plc, Cambridge, UK), CYP19A1 (Abcam plc, Cambridge, UK), β-actin (Abgent, San Diego, CA, USA) and GAPDH (CWBIO, Beijing, China) by SDS-PAGE and Western blotting.
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2

Liver Histology and Immunohistochemistry

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Formaldehyde-fixed (10%) and paraffin-embedded liver tissue sections were stained with hematoxylin and eosin. Four-micrometer-thick sections were cut from paraffin block and coated on a glass slide. Immunohistochemistry for HNF4α, NTCP, and Cyp7a1 (Abcam, Cambridge, UK) expressions (Abcam, Cambridge, UK) was performed. A single-blinded pathologist evaluated histological characteristics, intensity, extent, and immune-reactive scores of immune-stained sections.
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3

Western Blot Analysis of Liver and Ileum Proteins

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Total proteins from liver and ileum tissues were extracted as previously described (62 (link)). Total proteins (40 μg per lane) were separated by 10% SDS-PAGE and then electrotransferred to nitrocellulose membranes. The membranes were incubated with primary antibodies against FXR (NR1H4, 1:1,000; Abcam, USA), SREBP2 (1:1,000; Abcam, USA), CYP7A1 (1:1,000; Abcam, USA), CYP8B1 (1:1,000; Abcam, USA), CYP7B1 (1:1,000; Proteintech Group, USA), CYP27A1 (1:1,000; Proteintech Group, USA), BSEP (1:200; Santa Cruz Biotechnology, USA), and β-actin (1:1,000; Cell Signaling Technology, USA) overnight at 4°C. After washing with 0.1% Tween 20–phosphate buffer solution (PBST) three times, the membranes were incubated with goat anti-mouse or goat anti-rabbit IRDye 700 or 800 calcofluor white (CW)-labeled secondary antibodies for 1 h at 37°C and imaged with an Odyssey infrared scanner (LI-COR, Lincoln, NE, USA). Quantification was performed using the LI-COR software Image Studio.
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4

Western Blot Analysis of Intestinal Proteins

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Intestines were lysed with sodium dodecyl sulfate sample buffer containing protease inhibitor cocktail (Roche Life Science). Protein concentrations were determined by the BCA protein assay kit (Thermo Fisher Scientific). Equal protein amounts were subjected to SDS-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes. The membranes were blocked with 5% BSA and then incubated overnight at 4 °C with primary antibodies against FXR (Santa Cruz Biotechnology), CYP8B1 (Abcam) and CYP7A1 (Abcam). Then the blots were incubated with anti-rabbit IgG or anti-mouse IgG antibody (Cell Signaling Technology), and HRP-conjugated monoclonal mouse anti-GAPDH (KangChen) as control for normalization. Signals were further visualized by SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo Fisher Scientific) under ChemiDoc MP Imaging System (Bio-Rad).
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5

Automated Western Blot Analysis of Liver Proteins

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Rat liver protein lysates in radioimmunoprecipitation assay buffer were separated by Wes automated gel electrophoresis system (Protein Simple). Primary antibodies and dilutions were as follows: CYP7A1 (Abcam no. ab234982, 1:20), FXR (Thermo Fisher Invitrogen no. 417200, 1:50), RXRa (Abcam no. ab125001, 1:20), and GAPDH (Cell Signaling Technology no. 2118, 1:20). Protein input for CYP7A1 and FXR assays was 0.25 mg/mL. Protein input for RXR assay was 0.5 mg/mL. GAPDH assays used both 0.25 mg/mL and 0.5 mg/mL protein input. Anti-rabbit (Protein Simple no. 042-206, RTU) or anti-mouse (Protein Simple no. 042-205, RTU) horseradish peroxidase–conjugated secondary antibodies were utilized, followed by chemiluminescent substrate (Protein Simple no. PS-CS01, Luminol-S, Peroxide). Signal was detected using the Wes System camera. Immunoblot electrophoretograms were analyzed by Compass Software (Protein Simple).
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6

Western Blot Analysis of Liver and Ileum Proteins

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Total proteins from liver and ileum tissues were extracted as previously described (62 (link)). Total proteins (40 μg per lane) were separated by 10% SDS-PAGE and then electrotransferred to nitrocellulose membranes. The membranes were incubated with primary antibodies against FXR (NR1H4, 1:1,000; Abcam, USA), SREBP2 (1:1,000; Abcam, USA), CYP7A1 (1:1,000; Abcam, USA), CYP8B1 (1:1,000; Abcam, USA), CYP7B1 (1:1,000; Proteintech Group, USA), CYP27A1 (1:1,000; Proteintech Group, USA), BSEP (1:200; Santa Cruz Biotechnology, USA), and β-actin (1:1,000; Cell Signaling Technology, USA) overnight at 4°C. After washing with 0.1% Tween 20–phosphate buffer solution (PBST) three times, the membranes were incubated with goat anti-mouse or goat anti-rabbit IRDye 700 or 800 calcofluor white (CW)-labeled secondary antibodies for 1 h at 37°C and imaged with an Odyssey infrared scanner (LI-COR, Lincoln, NE, USA). Quantification was performed using the LI-COR software Image Studio.
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7

Protein Expression Analysis in Liver

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Protein expression of liver sterol regulatory element-binding transcription factor 1 (SREBP-1), 3-hydroxy-3-methylglutaryl coenzyme-A reductase (HMGCR), cytochrome P450 7A1 (CYP7A1), and CD36 (also known as cluster of differentiation 36 or fatty acid translocase (FAT)) were measured by western blotting as described in detail elsewhere [9 (link)]. The primary antibodies used were obtained from SREBP-1 (A-4) (Santa Cruz, CA, USA), HMGCR, CYP7A1, and CD36 (Abcam, Waltham, MA, USA). A BLUeye Prestained Protein Ladder was used to approximate kDa. BioRad 4–15% gradient precast gels were used for each western blot. Blots were imaged using the ChemiDoc Technology (BioRad, Hercules, CA, USA) after applying substrate.
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