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24 protocols using u73122

1

IPEC-J2 Cell Spermine and TNF-α Protocol

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IPEC-J2 cell experimental protocol was performed as per our previously depicted study (Mo et al., 2021 (link)). Briefly, cells were grown in DMEM-F12 and 10% fetal bovine serum (Gibco, USA). They were pre-incubated with NSC-23766 (160 μmol/L) or U73122 (3 μmol/L) in the culture media for 1 h before spermine (0.1 μmol/L) was added to the culture medium for 50 h. The cells were pre-incubated with spermine (0.1 μmol/L) in the culture media for 2 h before TNF-α (40 ng/mL) was added to the culture medium for 48 h. Cell samples were collected after receiving 40 ng/mL TNF-α challenge for 48 h. Inhibitor of Rac1 and PLC-γ1 (NSC-23766 and U73122) were purchased from Selleck Chemicals. TNF-α (Sus scrofa) were purchased from Raybiotech (America).
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2

Pharmacological Inhibition of U73122 and Futibatinib in Cell Assays

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U73122 was obtained from Selleckchem (Houston, TX, USA) and futibatinib (TAS-120) was obtained from Chemgood (Glen Allen, VA, USA). Approximately 24 h after transfection, cells were starved with no FBS for 18 h. Stated concentrations of U73122 or futibatinib were added 14 h into the starvation period. Cells were then collected and lysed as described for immunoblotting and immunoprecipitation analyses. For experiments involving U73122 or futibatinib performed in NIH3T3 cell focus assays, cells were re-fed with the respective drug in 2.5% CS/DMEM media every 3–4 days, after which they were fixed and scored for transfection efficiency as described. The amount of drug was initially titrated for each assay in order to avoid toxicity to the various cell lines. Each experiment had a total of 2 technical replicates and 4 biological replicates.
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3

Preparation and Treatment of HEK Cells

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U73122 (S8011, Selleck Chemicals, Houston, TX, USA) is dissolved in dimethyl sulfoxide (DMSO, D8371, Beijing, China), with the final concentration of 9 mM, and stored at −20 °C. For subsequent experiments, combined with cell viability results (see Supplementary data: Supplementary Fig s9a) and previous research results49 (link),54 (link), we selected 9 μM U73122 treatment of HEK for 15 min.
MK-2206 (2HCl) (S1078, Houston, TX, USA) is dissolved in dimethyl sulfoxide (DMSO, D8371, Beijing, China), with the final concentration of 12 mM, and stored at −80 °C. For subsequent experiments, combined with cell viability results (see Supplementary data: Supplementary Fig s9a) and previous research results55 (link), we selected 12 μM MK-2206 treatment of HEK for 24 h.
Pertussis toxin (PTX, P7208, Sigma-Aldrich St., Louis, USA) is dissolved in ddH2O, with the final concentration of 200 μg/ml, and stored at 4 °C. For subsequent experiments, combined with cell viability results (see Supplementary data: Supplementary Fig s9a) and previous research results48 (link), we selected 200 ng PTX treatment of HEK for 4 h.
Fluo-3 AM (F1241, Invitrogen, Thermo Fisher Scientific, USA) is dissolved in dimethyl sulfoxide (DMSO, D8371, Beijing, China), with the final concentration of 3 mM and stored at the light-free conditions at −20 °C.
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4

Vascular Tension Modulation Assay

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Phenylephrine (PE; Sigma-Aldrich; Merck KGaA), sodium nitroprusside (SNP; Sigma-Aldrich; Merck KGaA), indomethacin (Cyclooxygenase 2 inhibitor; Sigma-Aldrich; Merck KGaA), EDTA (Sigma-Aldrich; Merck KGaA), dimethyl sulfoxide (DMSO; Sigma-Aldrich; Merck KGaA), acetylcholine (Ach; Apexbio Corporation), MDL12330A (AC-V inhibitor, Apexbio Corporation). NPS2143 (CaSR inhibitor, R&D Systems, Inc.), NPSR568 (CaSR agonist, R&D Systems, Inc.). NG-nitro-L-arginine methyl ester (L-NAME, NOS inhibitor; Selleck Chemicals), U73122 (PLC inhibitor, Selleck Chemicals), 2-aminoethoxydiphenyl borate (2-APB, IP3 inhibitor; Selleck Chemicals), Captopril (CAP, angiotensin-converting enzyme inhibitor, Selleck Chemicals), Losartan [LOS, angiotensin II receptor type 1 (AT1R) inhibitor, Selleck Chemicals]. All of the other chemicals were of reagent grade. indomethacin, L-NAME, NPS2143, NPSR568, U73122, 2-APB, MDL12330A, CAP and LOS were dissolved in DMSO to prepare stock solutions (10−1 mol/l), with the use of double distilled water prepared into the corresponding working fluid. The other agents were prepared in double distilled water. Studies have shown no notable effects on the tension development of isolated arteries with concentrations of DMSO<0.2% (27 (link)–29 (link)).
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5

Cell Viability Assay with Small Molecule Inhibitors

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Small molecule inhibitors were purchased from Tocris Biosciences (R&D Systems): PF-4708671, U 73122, GSK2334470, IPA3, SL0101-1 and XMD 8-92 or from Selleck Chemicals LLC (TX, USA): PF-562271, Enzastaurin (LY317615), AUY922 (NVP-AUY922), 17-AAG (Geldanamycin), PF-04929113 (SNX-5422), AZD6244 (Selumetinib), AT7867, CHIR-98014, LY2228820, BIX 02188, AS703026, PH-797804, SP600125, NU7441. All inhibitors were prepaed in DMSO at 100 mM. Cells were treated with inhibitors prepared in culture media where the final concentration of DMSO was 2% v/v. Vehicle control treatments consisted of culture media containing 2% v/v DMSO. Six days after treatment, cell survival was measured in comparison to vehicle controls using the CellTiter 96® Assay as per manufacturer instructions (MTS assay, Promega Corporation, WI, USA). Data were analyzed in GraphPad Prism® version 5.00 for Windows (GraphPad Software, CA, USA) to measure the log10 of IC50 for each drug. For combination assays, drugs were added simultaneously. Heatmaps for sensitivities (-log10 of IC50) were prepared using D-chip Analyzer software [49 (link)].
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6

Inhibitors for EGFR, Akt, MEK, and PLC-γ1

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AG1478 (EGFR inhibitor), MK2206 (Akt inhibitor), U0126 (MEK inhibitor) and U73122 (PLC-y1 inhibitor) were purchased from Selleck Chemicals (Houston, TX, USA). EGF and TRIzol reagent were purchased from Invitrogen Corp. (Carlsbad, CA, USA). Prolactin was purchased from Sigma-Aldrich (St. Louis, MO, USA). Lipofectamine™ 2000 and RNAiMAX were purchased from Thermo Fisher Scientific, Inc. (Waltham, MA, USA). Unless otherwise specified, all of the chemicals were purchased from China.
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7

UVA Irradiation and Inhibition Assay

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Solar UV Simulator SUV‐1000 (Sigma, Shanghai, China) with an emission spectrum between 320 nm and 400 nm served as the UVA source. UVA dose was measured using a UVA radiometer (Sigma, Shanghai, China). Prior to UVA irradiation, NHDFs were washed twice with phosphate‐buffered saline (PBS) and cultured in PBS to avoid the side‐effects associated with photosensitization in the culture medium. For the inhibition experiments, NHDFs were preincubated for 5 min with 9 μmol L−1 U73122 (S8011, Selleck Chemicals, Houston, TX, U.S.A.) and were then irradiated with UVA at 10 J cm−2. The cell lysates were collected for further research 48 h after UVA irradiation.
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8

IDH2-mutant Cell Culture Conditions

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TF‐1 cells (CRL‐2003; ATCC) and TF‐1 IDH2 mut cells (CRL‐2003IG; ATCC), in which the homozygous c.419G > A knock‐in mutation encoding the IDH2R140Q protein was induced by CRISPR/Cas9 technology, were purchased from the ATCC. These cells and THP‐1 cells were maintained in RPMI‐1640 medium supplemented with 10% FBS and 1% penicillin/streptomycin. The following reagents were added to the culture: 2 ng/mL human GM‐CSF (PeproTech), 1 μM AG‐221 (enasidenib; Selleck Chemicals), 10 μM m‐3M3FBS (Merck), 100 nM U‐73122 (Selleck Chemicals), 2 IU/mL erythropoietin (Kissei Pharmaceutical), 20 μM celecoxib (Selleck Chemicals), and 50 μM zileuton (Selleck Chemicals). The same concentration of DMSO was added as a vehicle control. Regarding live cell counting, dead cells were excluded by Trypan blue dye staining.
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9

SCFAs Modulate T Cell Phenotype

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For the surface markers and intracellular cytokine detection, CD8+ and Vδ2+ T cells were treated with 10 mM sodium acetate (AA; Sigma, S2889), 1 mM sodium propionate (PA; Sigma, P1880) or 0.5 mM sodium butyrate (BA; MCE, HY-B0350A) for two times at 2-day intervals. In some experiments, SCFAs pretreated-CD8+ and Vδ2+ T cells were activated with 5 μg/mL anti-human CD3 and 1 μg/mL anti-human CD28 for 4 h, followed by flow cytometry analysis. For histone acetyltransferase inhibition, CD8+ and Vδ2+ T cells were treated with control, 0.5 mM BA, 1 μM A-485 (Selleck, S8740), or BA+A-485 for 48 h, and then the expression of PD-1 and CD28 on CD8+ and Vδ2+ T cells was measured by flow cytometry. Similarly, the levels of histone 3 lysine 9 acetylation (H3K9ac) and histone 3 lysine 27 acetylation (H3K27ac) in protein lysates were detected by immunoblotting. For the p-PLCγ1 detection, vehicle or 0.5 mM BA pretreated CD8+ and Vδ2+ T cells were treated with or without 2 μM U73122 (Selleck, S8011) under the condition of 5 μg/mL anti-human CD3 and 1 μg/mL anti-human CD28 activation for 1 hour, followed by immunoblotting. Unless mentioned otherwise, SCFAs pretreated T cells (CD8+ and Vδ2+) used in all the experiments were treated by 10 mM AA, 1 mM PA or 0.5 mM BA for two times at 2-day intervals in vitro.
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10

Immortalized Mouse Podocyte Culture

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Immortalized mouse podocytes were a generous gift of Professor Ai Hua Zhang from Children's Hospital of Nanjing Medical University; the cells were cultured in RPMI 1640 medium with 10% foetal bovine serum (FBS) at 33 °C as described previously 24 (link). Podocytes were thermo-shifted to 37 °C for 10 days before they were used in the experiments. Chemical agents, GLPG0974 (10 μmol/L) (R&D Systems, USA), AICAR (10 μmol/L), U73122 (10 μmol/L), and Go 6983 (10 μmol/L) (Selleck, USA), were acquired for the experiments.
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