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Semi preparative hplc

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The Semi-preparative HPLC is a high-performance liquid chromatography system designed for the separation and purification of sample components on a semi-preparative scale. It is used to isolate and collect specific compounds from complex mixtures.

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11 protocols using semi preparative hplc

1

NMR, UV, IR, and HPLC Analysis

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A Bruker DRX 400 or 500 MHz spectrometer (Bruker-Biospin, Karlsruhe, Germany) was used for the analysis of NMR signals using methanol-d4 as a solvent. The UV and IR spectra were obtained using Jasco UV-550 (JASCO, Tokyo, Japan) and Perkin–Elmer model LE599 (Perkin–Elmer, Waltham, MA, USA) spectrometers, respectively. ESIMS and HRESI-TOF-MS data were obtained with LCQ Fleet and maXis 4G mass spectrometers (Bruker Daltonics, Bremen, Germany), respectively. Semi-preparative HPLC (Waters, Milford, MA, USA) was performed using a Waters 515 HPLC pump with a 996-photodiode array detector, and Waters Empower software using a Gemini-NX ODS-column (150 × 10.0 mm and 150 × 21.2 mm). Column chromatography procedures were performed using silica gel (200–400 mesh, Fisher Scientific, Waltham, MA, USA) and Sephadex LH-20 (25–100 µm, Pharmacia Fine Chemical Industries Co., Uppsala, Sweden). Thin-layer chromatography (TLC) was performed using aluminum plates precoated with Kieselgel 60 F254 (0.25 mm, Merck, Darmstadt, Germany).
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2

Isolation and Characterization of Compound 1

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Large scale fermentation (50 L) and the extraction of XY-FW47 were obtained as the described method of small scale. The EA crude extract of XY-FW47 was separated by reverse phase C18 chromatography with water and methanol solvent mixtures of H2O–MeOH (7:3), H2O–MeOH (5:5), H2O–MeOH (3:7), H2O–MeOH (1:9), and 100% MeOH. The fractions of H2O–MeOH (3:7, v/v) was evaporated and labeled Fraction (Fr.) 70%. The fraction was subjected to Sephadex LH-20 by mixtures of chloroform/methanol (1:1) yielding 16 fractions and marked Fr.70%-1 to Fr.70%-16. Then, Fr.70%-10 to Fr.70%-14 were purified by the elution of MeCN–H2O (70:30, (v/v), flow rate: 2 mL/min) through the semi-preparative HPLC (Waters, Parsippany, NJ, USA) using analytical and semi-preparative reverse-phase phenomenex biphenyl columns (5 μm, 250 × 4.6 mm and 5 μm, 250 × 10 mm in size), and finally afforded pure Compounds 1 (2.6 mg), 2 (12 mg), 3 (7 mg) and 4 (1 mg) at a retention time of 24.0 min, 25.0 min, 26.0 min and 27.4 min, respectively. The further 1H, 13C and 2D NMR spectral data were determined on a Bruker DRX 600 MHz NMR Spectrometers.
4,5-Dihydro-17-O-demethylgeldanamycin (1): yellow amorphous powder; [α]D25 +42.0° (c 0.18, CHCl3); UV (MeOH) λmax 305 nm, HR-ESI-MS m/z 547.2636 [M − H] (calcs for C28H40N2O9 547.2656); 1H and 13C NMR data, see Table 4.
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3

Spectroscopic Characterization of Novel Compounds

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The NMR spectra were obtained with a Bruker 500 spectrometer ((Bruker, Bremen, Germany)) operating at 500 MHz for 1H and 125 MHz for 13C, respectively. Chemical shifts were reported in parts per million on the δ scale with TMS as the internal standard. The optical rotations were measured on a JASCO P-1020 Optical Rotation Apparatus (Jasco, Tokyo, Japan). ESI-HRMS spectra were measured on an Agilent 1100 LC/MSD TOF mass spectrometer (Agilent, California, USA). The CD spectrum were obtained on a JASCO810 spectropolarimeter (Jasco, Tokyo, Japan). Compounds 17 were purified by semi preparative HPLC (Waters, Milford, USA) using a Waters 600 liquid chromatograph with a Alltech 2000Esc ELSD detector (110 °C, flow rate of the condensed air, 3.1 mL min−1) and with a Phenomenex HPLC column (4 μm, 4.6 × 250 mm, Phenomenex Hydro-RP 80R).
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4

Purification and Analysis of Organic Compounds

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All commercially available reagents, compounds, and solvents were purchased and used without further purification. Column chromatography on silica gel was performed on RediSep column using the Teledyne Isco CombiFlash Rf system. Preparative purification was performed on a Waters semi-preparative HPLC. The column used was a Phenomenex Luna C18 (5 micron, 30 × 75 mm) at a flow rate of 45 mL/min. The mobile phase consisted of acetonitrile and water (each containing 0.1% trifluoroacetic acid). A gradient of 10% to 50% acetonitrile over 8 minutes was used during the purification. Fraction collection was triggered by UV detection (220 nm).
1H spectra were recorded using an INOVA 400 MHz spectrometer (Varian). Samples were analyzed on an Agilent 1200 series LC/MS using a Zorbax Eclipse XDB-C18 reverse phase (5 micron, 4.6 × 150 mm) column and a flow rate of 1.1 mL/min. The mobile phase was a mixture of acetonitrile and H2O each containing 0.05% trifluoroacetic acid. LC Method A: a gradient of 4% to 100% acetonitrile over 7 minutes was used during analytical analysis. LC Method B: a gradient of 4% to 100% acetonitrile over 3 minutes was used during analytical analysis. High resolution mass spectrometry was recorded on Agilent 6210 Time-of-Flight LC/MS system. Spectra of compounds are listed in Supplementary File 18.
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5

Purification and Characterization of Sanshools

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Sanshools were extracted as described (15 (link)), with a minor modification. The SCF extracts (60 g) were mixed with water-free silica (120 g), and thrice defatted with 400 mL anhydrous ether. The defatted sample was homogenized with 200 mL methanol at 55°C for 6 h; the crude extract was refluxed with 60 mL petroleum ether overnight after filtering and vacuum evaporation. The supernatant was collected and crystallized at −20°C. The suspension was dried using dry N2 gas at 4°C.
Further purification was done by semi-preparative HPLC (Waters Technologies, Milford, MA, USA). The mobile phase consisted of (A) water and (B) acetonitrile. A Waters preparative C18 column (9.4 ×250 mm, 5 μm) was used with the following gradient elution program: 0 min, 35% B; 30 min, 75% B; 40 min, 100% B; 45 min, 100% B; and 50 min, 35% B. Purified extract was subjected to mass spectrometry using an API 4000 QTrap mass spectrometer (AB/Sciex, Framingham, MA, USA) fitted with an electrospray ionization (ESI) source, using the following parameters: turbo ion spray probe, 400°C, ion spray voltage, 4500 V, entrance potential, 6 V, and collision energy of 10 V. In addition, nuclear magnetic resonance (NMR) including 13C NMR and 1H NMR was done as described 24 with a VNMRS600 NMR spectrometer (Agilent, Palo Alto, USA) to identify the purified extract.
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6

Purification and Characterization of Organic Compounds

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All commercially available reagents, compounds, and solvents were purchased and used without further purification. Column chromatography on silica gel was performed on RediSep column using the Teledyne Isco CombiFlash Rf system. Preparative purification was performed on a Waters semi-preparative HPLC. The column used was a Phenomenex Luna C18 (5 micron, 30 × 75 mm) at a flow rate of 45 mL/min. The mobile phase consisted of acetonitrile and water (each containing 0.1% trifluoroacetic acid). A gradient of 10% to 50% acetonitrile over 8 minutes was used during the purification. Fraction collection was triggered by UV detection (220 nm).
1H spectra were recorded using an INOVA 400 MHz spectrometer (Varian). Samples were analyzed on an Agilent 1200 series LC/MS using a Zorbax Eclipse XDB-C18 reverse phase (5 micron, 4.6 × 150 mm) column and a flow rate of 1.1 mL/min. The mobile phase was a mixture of acetonitrile and H2O each containing 0.05% trifluoroacetic acid. LC Method A, a gradient of 4% to 100% acetonitrile over 7 minutes was used during analytical analysis. LC Method B, a gradient of 4% to 100% acetonitrile over 3 minutes was used during analytical analysis. High resolution mass spectrometry was recorded on Agilent 6210 Time-of-Flight LC/MS system.
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7

Actinobacterial Strain Extraction and Purification

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The actinobacterial strain K. albolonga R62 was distributed to 250 ml Erlenmeyer flask containing 80 ml SGTYP medium (5 g of starch, 5 g of glucose, 1 g of peptone, 1 g of tryptone, 1 g of yeast extract, and 17 g artificial sea salt is dissolved in 1 L double-distilled water, pH 7.4–7.6) and fermented at 28°C, 200 rpm for 5 days. In total, nearly 15 L of culture broth was centrifuged at 10,000 × g for 15 min to remove cells. The supernatant was extracted using ethyl acetate (ν/ν 1:3) three times to yield an EtOAc extract (3.0 g) after concentration. The extract was separated by ODS open column elution with a gradient of MeOH-H2O (20–100%, at intervals of 10%) to afford nine fractions (Fr. 1–Fr. 9). HPLC-MS analysis of these fractions showed that natural products are mainly concentrated in Fr. 3 and Fr. 4. Both fractions were isolated and purified by semipreparative HPLC (Waters, Parsippany, NJ, United States) using semipreparative reverse-phase Phenomenex C18 columns (5 μm, 250 × 10 mm in size) with a gradient mobile phase of ACN-H2O (40–60%) to yield compounds 1 and 2.
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8

Characterization of Synthetic Compounds

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Final compounds were characterized by 1H NMR, electrospray ionizing mass spectrometry (ESI-MS), and HPLC retention time. 1H NMR data were obtained on a 500 MHz Varian spectrometer using CD3OD as the solvent. ESI-MS was obtained using an Agilent 6130 LC–MS mass spectrometer in positive ion mode. The retention time and purity of final compounds were assessed using a Waters Alliance 2690 analytical HPLC instrument with a Vydac protein and peptide C18 reverse phase column. Retention times were obtained by running a linear gradient starting at 0% solvent B (99.9% acetonitrile, 0.1% TFA) and 100% solvent A (99.9% water, 0.1% TFA) to 70% solvent B and 30% solvent A in 70 min, measuring UV absorbance at 230 nm. All final compounds used for testing were ≥95% pure, as determined by analytical HPLC. Purification of final compounds was performed using a Waters semipreparative HPLC with a Vydac protein and peptide C18 reverse phase column, using a linear gradient of 0% solvent B (0.1% TFA in acetonitrile) in solvent A (0.1% TFA in water) to 100% solvent B in solvent A at a rate 1% per minute, monitoring UV absorbance at 230 nm. Full synthetic procedures and characterization data can be found in the Supplemental Information section.
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9

Comprehensive Analytical Characterization

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Optical rotations were recorded on a MCP500 modular circular polarimeter (Anton Paar Opto Tec GmbH, Seelze, Germany). UV spectra were obtained on a GENESYS 10S UV-Vis spectrophotometer (Thermo Fisher Scientific, Shanghai, China). HRESIMS were measured on a Bruker maXis ESI-QTOF mass spectrometer (Bruker Daltonics, Bremen, Germany). NMR spectra were recorded on a Bruker AV-400 spectrometer with TMS as the internal standard. Single-crystal X-ray diffraction analyses were made on an Agilent Xcalibur Atlas Gemini Ultra-diffractometer (Agilent Technologies, Santa Clara, CA, USA) with mirror monochromated CuKα radiation (λ = 1.54178 Å) at 150 K. Semi-preparative HPLC (Waters Corporation, Milford, MA, USA) was performed on a Waters 2535 pump equipped with a waters 2998 photodiode array detector and YMC C18 reverse-phased columns (250 mm × 10 mm i.d., 5 μm). For column chromatography, silica gel (100–200 mesh) (Qingdao Mar. Chem. Ind. Co. Ltd., Qingdao, China) and C18 reverse-phased silica gel (ODS-A-HG 12 nm, 50 µm, YMC Co. Ltd., Kyoto, Japan) were used. ECD spectra were measured on a Jasco J-810 spectropolarimeter (JASCO Corporation, Tokyo, Japan) in MeCN.
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10

Isolation of 4-Hydroxybenzoic Acid

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The crude extract was pre-fractionated on a reversed phase C18 flash column (10 g, 15 ml) using an Isolera One automated flash system (BIOTAGE, Uppsala, Sweden). The gradient was 10% stepwise (15 column volumes) from 30–100% methanol (MeOH) buffered with 20 mM formic acid with a flow of 15 ml/min. Nine fractions were collected manually every 10% step. MeOH was of HPLC grade and water was purified and deionized using a Millipore system through a 0.22 μM membrane filter (Milli-Q water).
4-Hydroxybenzoic acid (fraction 1E) was purified from the Isolera fraction (fraction 1) on a Waters semi-preparative HPLC, with a Waters 600 Controller (Milford, MA, USA) coupled to a Waters 996 Photodiode Array Detector. Separation was achieved on a Luna II C18, 5 μm, 250 × 10 mm column (Phenomenex, Torrance, CA, USA) with a flow of 5 ml min−1 using a linear gradient 5% MeCN in Milli-Q water with 50 ppm TFA going to 35% MeCN in 24 min, from 35–45% MeCN in 2 min, 45–100% MeCN in 2 min, kept for 5 min at 100% MeCN and down to the starting conditions in 2 min. MeCN was of HPLC grade.
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