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7 protocols using anti pd 1 fitc

1

Comprehensive T-cell Phenotyping Protocol

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Following in vitro re-stimulation, cells were surface-stained with fluorochrome-labeled antibodies anti-CD3-Alexa-Fluor700, anti-CD8-V500 and anti-CD4-APC Cy7 (BD Biosciences, BioLegend). In addition, HLA class I CMV tetramers-PE labeled (A*01 VTE, A*02 NLV, B*07 TPR, B*08 ELR and B*035 IPS) (Beckman Coulter or IBA Solution for Life Sciences), and Live/Dead Fixable Blue Dead-Cell Stain (Invitrogen) was used for gating on viable cells. In some experiments we used surface-stained with fluorochrome-labeled antibodies anti-PD1-FITC and anti CD160-PE Cy7 (BD Biosciences, BioLegend). Cytofix/Cytoperm (BD Biosciences) reagents were used to fix and permeabilize cells for intracellular cytokine staining (ICS) using anti-IFN-γ-PE Cy7 (or BV605), anti-IL-2-FITC, anti-Granzyme B-PE CF 594, anti-CD107a-Pacific Blue, anti-T-bet-PE or BV655 (BD Biosciences) and anti-Eomes-Alexa-Fluor 660 (eBiosciences).
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2

CD4+ Memory T-Cell Phenotyping

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A blood sample of 200 μl was used for CD4+ memory T-cell phenotyping with the following antibodies: anti-CD8-FITC (1/10, clone RPA-T8), anti-PD1-FITC (1/5, clone MIH4), anti-CD122-PE (1/10, clone Mik-B3), anti-CD62L-V450 (1/10, clone DREG-56), anti-CD4-V500 (1/20, clone RPA-T4), anti-CD95-APC (1/10, clone DX2), anti-CD45RA-PE-Cy7 (1/20, clone HI100), anti-CD45RO-PerCPCy5.5 (1/10, clone UCHL1), anti-CCR7-PE-CF594 (1/10, clone 150503), anti-CXCR3-Alexa 700 (1/10, clone 1C6/CXCR3), anti-CD27-APC-H7 (1/10, clone M-T271) (all from BD Biosciences), and anti-CD3-eFluor 650NC (1/10, clone OKT3, eBioscience). After staining, the blood sample was fixed (fix/lyse solution, BD Biosciences) and cells were acquired on a BD LSR Fortessa cytometer (BD Biosciences). Data were analysed with Flow Jo software.
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3

Comprehensive Immunophenotyping of Bone Marrow Cells

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BM-MNC (1.5×106 cells/sample) were stained with appropriate conjugated antibodies in PBS with 2% BSA. Specifically, human BM-MNC were stained with: anti-CD33-PE-Cy7, anti-CD34-PerCP-Cy5.5, anti-CD14-BV510, anti-CD71-BV421, anti-CD38-BV711, anti-CD235a-BUV395, anti-PD-1-FITC, and anti-PD-L1-APC (BD Biosciences). Gating strategies for the identification of myeloid cells, HSPCs, and erythroid progenitors are shown in Supplementary Figure S1. Mouse BM cells were stained with: anti-c-Kit-PerCP-Cy5.5, anti-Sca-1-PE, Lin-APC (including anti-CD3ε, anti-CD11b, anti-CD45R/B220, anti-TER-119, anti-Gr-1), anti-PD-1-BV421, anti-PD-L1BV711, anti-PD-L2-BUV395, and anti-CD16/32-PE-Cy7 (BD Biosciences). Cell viability was determined using near infrared live/dead dye (BD Biosciences) and the negative (live cell) population was used for further analysis. Samples were acquired on an LSR II flow cytometer and analyzed using FlowJo 9.9.3 software. Intracellular staining with PE-conjugated anti-active caspase 3 was performed using Cytofix/Cytoperm™ protocol following initial cell surface receptor staining (BD Biosciences). For PD-1/PD-L1 ligation experiments, 2 million BM-MNC were plated per well in 24-well plates coated with recombinant human PD-L1 (2 μg/mL) for 24 hr at 4 °C.
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4

Inhibitory Receptor Expression on Cytokine-Producing T Cells

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For staining of inhibitory receptors, stimulated PBMCs were surface stained with anti-CD4 (V500; BD Biosciences), anti-CD3 (APC-H7; BD Biosciences), anti-CD8 (Alexa Fluor 405; Invitrogen), anti-PD-1 (FITC; BD Bioscience) and anti-human TIM-3 antibody (PE; R&D Systems) for 30 min at 4°C. Cells were washed, fixed, permeabilized (Invitrogen), and intracellularly stained with anti-IFN-γ (PE-Cy7; BD Biosciences), anti-IL-2 (BV605; BD Biosciences), and anti-CTLA-4 (APC; BD Biosciences) for 30 min at 4°C, washed and fixed with 1% formaldehyde. Cells were analyzed using a LSR-II flow cytometer (BD Immunocytometry Systems). One million events were collected. Electronic compensation was performed with Ab capture beads (BD Biosciences) stained separately with individual monoclonal Abs used in the test samples. The data files were analyzed using Diva (BD) and FlowJo Software (Treestar, Co). The expression of TIM-3, PD-1 and CTLA-4 was examined on cytokine-producing cells with frequencies ≥0.03% above the background (media control tube) to ensure an adequate number of events for analysis as previously validated by our laboratory [15 (link)–18 (link)]. Flourescence minus one (FMO) controls were used to set the gates for determining the mean fluorescent intensity (MFI) of TIM-3, PD-1 and CTLA-4 on Gag-responsive T cells expressing IFN-γ or IL-2.
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5

Multiparametric Flow Cytometry for Immune Profiling

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The following fluorochrome-conjugated monoclonal antibodies (mAbs) were purchased from commercial vendors and used for surface staining: anti-CD4-V500, anti-CD8-APC-H7, anti-CD45RA-PE-Cy7, anti-CD45RO-APC, anti-CCR7-AF700, anti-CD95-PE, anti-CD160-FITC, anti-CD244-FITC, and anti-PD-1-FITC (BD Biosciences, San Jose, CA); anti-CD3-BV605 (Biolegend, San Diego, CA); anti-CD14-Pacific Blue and anti-CD19-Pacific Blue (Life Technologies, Carlsbad, CA); and anti-CD27-PC5 (Beckman Coulter, Indianapolis, IN). The fixable violet amine reactive dye (ViViD; Invitrogen/Molecular Probes, Eugene, OR) was used to eliminate dead cells by flow cytometry. For intracellular cytokine staining, the following mAbs were used: anti-granzyme B (GZMB)-FITC, anti-IL-2-FITC, and anti-IFN-γ-FITC (BD Biosciences).
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6

Immunophenotypic Analysis of Bone Marrow Cells

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BM-MNC (1.5 × 106 cells/sample) were stained with appropriate conjugated antibodies in PBS with 2% BSA. Specifically, human BM-MNC were stained with anti-CD33-PE-Cy7, anti-CD34-PerCP-Cy5.5, anti-CD14-BV510, anti-CD71-BV421, anti-CD38-BV711, anti-CD235a-BUV395, anti-PD-1-FITC, and anti-PD-L1-APC (BD Biosciences). Gating strategies for the identification of myeloid cells, HSPCs, and erythroid progenitors are shown in Supplementary Figure S1. Mouse BM cells were stained with anti-c-Kit-PerCP-Cy5.5, anti-Sca-1-PE, Lin-APC (including anti-CD3ε, anti-CD11b, anti-CD45R/B220, anti-TER-119, anti-Gr-1), anti-PD-1-BV421, anti-PD-L1-BV711, anti-PD-L2-BUV395, and anti-CD16/32-PE-Cy7 (BD Biosciences). Cell viability was determined using near-infrared live/dead dye (BD Biosciences) and the negative (live cell) population was used for further analysis. Samples were acquired on an LSR II flow cytometer and analyzed using FlowJo 9.9.3 software. Intracellular staining with PE-conjugated anti-active caspase-3 was performed using the Cytofix/Cytoperm™ protocol following initial cell surface receptor staining (BD Biosciences). For PD-1/PD-L1 ligation experiments, 2 million BM-MNC were plated per well in 24-well plates coated with recombinant human PD-L1 (2 μg/mL) for 24 h at 4 °C.
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7

Multiparametric Flow Cytometry Analysis

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The following fluorochrome-conjugated monoclonal antibodies (mAbs) were purchased from commercial vendors and used for surface staining: anti-CD4-V500, anti-CD8-APC-H7, anti-CD45RA-PE-Cy7, anti-CD45RO-APC, anti-CCR7-AF700, anti-CD95-PE, anti-PD-1-FITC and anti-CD69-FITC (BD Biosciences, San Jose, CA); anti-CD3-BV605 (Biolegend, San Diego, CA); anti-CD14-Pacific Blue and anti-CD19-Pacific Blue (Life Technologies, Carlsbad, CA); anti-CD30 Ligand /TNFSF8-AF488 and anti- A20/TNFAIP3- AF488 (Novus Biologicals, Littleton, CO) and anti-CD27-PC5 (Beckman Coulter, Indianapolis, IN). The fixable violet amine reactive dye (ViViD; Invitrogen/Molecular Probes, Eugene, OR) was used to eliminate dead cells by flow cytometry.
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