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19 protocols using ab15690

1

Immunohistochemical Analysis of Mouse Brain

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Mouse brains were perfused with 0.9% NaCl solution, fixed in 4% paraformaldehyde PBS solution, and dehydrated in 30% sucrose solution. After embedding, brain sectioning was done coronally. Primary antibodies mouse anti-Iba1 (1 : 500; Abcam Cat# ab15690, RRID:AB_2224403), and mouse anti-NeuN (1 : 100; Abcam Cat# ab104224, RRID:AB_10711040) were applied. Secondary antibodies, goat anti mouse Alexa Fluor 488 or 594 (1 : 500, EARTHOX, San Francisco, # E031220-01), were employed. Antiquenching mounting medium containing DAPI (VECTASHIELD, USA) was added to slides prior to being covered with coverslips for observation. Positive cells were detected by a fluorescence microscope (Olympus BX51, NIKON, Japan) at excitation/emission wavelengths of 547/570 nm (Cy3, red), 488/520 nm (FITC, green), and 360/460 nm (FITC, blue). Images were taken under 400x magnifications in 5-vision fields/section randomly, and the immunoreactive cells were counted.
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2

Immunofluorescence Staining of Rat Brain

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Samples were collected from animals at 24 h after perforation for double-fluorescence staining, performed as previously described [18 (link)]. The steps of cells immunofluorescence refer to the experimental method reported by Elliot H Choi et al. [23 (link)]. In brief, rat brains were perfused with 0.9 % saline first, and next the 4% paraformaldehyde, then fixed with 4% paraformaldehyde, dehydrated, and frozen at −80 °C. The samples were then sliced into 10 μm thick frozen sections, which were exposed O/N at 4 °C to the individual primary antibodies as follows: anti-CNPase (1:50, Abcam, ab6319), anti-Iba-1 (1:50, Abcam, ab15690), anti-GFAP (1:50, Abcam, ab10062), anti-myelin basic protein (MBP, 1:50, Abcam, ab62631), anti-Dexras1 (1:50, Abcam, ab78459), anti-NG2 (1:50, Biorbyt, orb382135), anti-NEUN (1:50, Merck Millipore, Burlington, MA, USA). The appropriate secondary antibody (Proteintech, SA00003-1/SA00009-2, Wuhan, China) was incubated with the brain sections at RT for 2 h, and the sections were observed and photographed using a fluorescence microscope (FV1200, Olympus, Tokyo, Japan). The main brain region we looked at was the subcortical area of the left cerebral hemisphere that was enriched for Dexras1 after subarachnoid hemorrhage.
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3

Quantifying Neuronal Apoptosis and Microglia

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Immunofluorescence (IF) staining was operated to detect the TUNEL-positive neurons (anti-NeuN, Alexa Fluor® 488 conjugated, Millipore, USA, 1 : 100) and the immunoreactivity of Iba1 (anti-IBA, ab15690, Abcam, USA, 1 : 100, active microglial marker) [21 (link)]. Apoptosis was determined by TUNEL detection kit (TMR red immunofluorescence staining kit from Sigma-Aldrich, MO, USA). Positive-cell counting and statistical analysis were restricted to our previous study [22 (link)]. The percentage of TUNEL-positive cells was calculated as follows: (number of TUNEL − positive neurons/total number of neurons) × 100%.
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4

Immunofluorescence Analysis of NLRP3 Inflammasome

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After deparaffinization and heat-mediated antigen retrieval, tissue sections were blocked with goat serum for 30 min at 37 °C and then incubated at 4 °C overnight with rabbit anti-CD86 (polyclonal; 1:200; 13395-1-AP; Proteintech, Rosemont, IL), rabbit anti-CD206 (polyclonal; 1:500; ab125028; Abcam), mouse anti-Iba-1 (1:100; ab15690; Abcam), or rabbit anti-NLRP3 (polyclonal; 1:200; ab214185; Abcam). After rewarming, sections were incubated with an Alexa Fluor 488-conjugated (1:200; ab150105; Abcam) or Alexa Fluor 594-conjugated (1:200; ab150076; Abcam) secondary antibodies for 4 h at 24–26 °C. All sections were then counterstained with 4′,6-diamidino-2-phenylindole, and images were visualized and obtained using a confocal laser-scanning microscope (C1; Nikon, Tokyo, Japan). Images were randomly selected, and NLRP3 levels were analyzed using the ImageJ software (NIH) to determine the average fluorescence intensity.
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5

Immunohistochemical Analysis of PRDX6 in Rat Brain

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Anti-PRDX6 immunohistochemistry was performed as previously described2 (link) on sections of rat cerebral cortex (paraformaldehyde-fixed) using rabbit anti-PRDX6 antiserum (GWB-007PE6; GenWay Biotech; 1:250 dilution), or mouse monoclonal anti-glial fibrillary acidic protein (GFAP) (MAB360; Millipore; 1:1000) for co-localization to astrocytes. Alexa Fluor® 488 donkey anti-rabbit (green) or Alexa Fluor 488 donkey anti-mouse (red) detection antibodies (Invitrogen; 1:100 dilutions) were used to visualize PRDX6 and GFAP, respectively. Additional analyses of cellular co-localization were carried out using antibodies directed against Iba-1 (ab15690; Abcam, Cambridge, Massachusetts, 1:1000) and ED-1 (MCA341R; AbD Serotec, Raleigh, North Carolina; 1:150) for quiescent and activated microglia, respectively; and NeuN (MAB377; Millipore; 1:1000) for neurons. These data (not shown) confirmed that PRDX6 is primarily associated with astrocytes in rodent brain.
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6

Multimodal Immunohistochemical Staining Protocol

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After the slides were pretreated as described in the immunohistochemical analysis section, the sections were simultaneously incubated with two primary or secondary antibodies. The primary antibodies used in the staining were as follows: mouse anti‐HCMV pp65 monoclonal antibody (ab49214, 1:200, Abcam, Cambridge, UK), rabbit anti‐IFITM3 polyclonal antibody (HPA004337, 1:200, Sigma‐Aldrich, St. Louis, MO, USA), mouse anti‐NeuN polyclonal antibody (ab104224, 1:200, Abcam, Cambridge, UK), mouse anti‐GFAP polyclonal antibody (3670s, 1:200, CST, Danvers, USA), mouse anti‐Iba‐1 polyclonal antibody (ab15690, 1:200, Abcam, Cambridge, UK), and mouse anti‐IE1 (ab65104, 1:40, Abcam, Cambridge, UK). The secondary antibodies were Alexa Fluor 488‐labeled donkey anti‐mouse immunoglobulin G (IgG) and Alexa Fluor 594‐labeled donkey anti‐rabbit IgG, 1:1000 for both (Life Technologies, USA). The nucleus was stained with DAPI, and the images were observed and recorded under a microscope (Olympus BX61, Olympus, Japan).
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7

Immunofluorescence Analysis of Ubqln Localization

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The cellular location of Ubqln was also determined in the brains of HI pups. Frozen sections were heated and washed with PBS then incubated with blocking solution with 10% normal goat serum for 1 h at room temperature. The sections were then incubated with primary antibody against RNA binding protein fox-1 homolog 3 (NeuN) for neurons (dilution, 1:1,000; cat. no. SAB4300883; Sigma-Aldrich; Merck KGaA), glial fibrillary acidic protein (GFAP) for astrocytes (dilution, 1:1,000; cat. no. ab10062, Abcam, Cambridge, USA), allograft inflammatory factor 1 (Iba-1) for microglial cells (dilution, 1:1,000; cat. no. ab15690, Abcam) and Ubqln (dilution, 1:500; cat. no. SAB1305680, Sigma-Aldrich, Merck KGaA) in PBS containing 0.3% Triton X-100 at 4°C overnight. The sections were then washed with PBS and incubated with the corresponding fluorescence-conjugated secondary antibodies (Alexa Fluor®488 goat anti-mouse IgG (H+L), cat. no. A-11029; Alexa Fluor®594 goat anti-rabbit IgG (H+L), cat. no. A-11012; Invitrogen; Thermo Fisher Scientific, Inc.) for 1 h at room temperature. Nuclei were stained for DAPI (0.1 µg/ml), for 5 min at room temperature. Images were obtained using a fluorescence microscope (BX51; Olympus Corporation). Ischemic ipsilateral cortical and hippocampal regions were selected for imaging, and five visual fields were selected for each section (magnification, ×100 and ×200).
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8

Immunohistochemical Analysis of Spinal Cord

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SD rats were anesthetized, and the ipsilateral spinal cord was removed on day 7 after surgery. Sample sections were incubated overnight with primary antibody against NeuN-Cy3 (1:100, ABN78C3; Millipore, Temecula, CA, USA), Iba1 (1:100, ab15690; Abcam, Cambridge, UK), GFAP (1:100; Sigma-Aldrich, St. Louis, MO, USA), p62 (1:100, ab56416; Abcam), LC3B (1:100, L7543; Sigma-Aldrich), LAMP2 (1:50, PA1-655; Thermo Fisher Scientific, Waltham, MA, USA), and cleaved caspase3 (1:100, #9661S; Cell Signaling). After washing, the sections were incubated in the secondary antibody for 2 h at room temperature. Each sample section was stained with DAPI, followed by coverslips, and mounted onto slides. All samples were mounted with Fluoroshield™ with DAPI (F6057; Sigma-Aldrich; blue-fluorescent dye) and analyzed on a Zeiss LSM700 (Carl Zeiss, Oberkochen, Germany) confocal microscope with Zen software. Images were processed and quantified using Photoshop (CS6; Adobe) and ImageJ (version 1.53j; National Institutes of Health, Bethesda, MD, USA).
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9

Immunohistochemical Analysis of Microglia and Astrocytes

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Mouse anti-TLR2 monoclonal antibody [T2.5] (ab59711), mouse anti-Iba1 monoclonal antibody (ab15690; used as marker for microglia) and mouse anti-glial fibrillary acidic protein (GFAP) monoclonal antibody (ab10062) were purchased from Abcam (Cambridge, UK); rabbit anti Sphk1 polyclonal antibody (sc-48825) and rabbit anti-TLR2 polyclonal antibody (sc-10739) were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA); fluorescence fluorescein isothiocyanate (FITC)-labeled goat anti-mouse secondary antibody (ZF-0312) and fluorescent rhodamine-labeled goat anti-rabbit secondary antibody (ZF-0316) were purchased from Beijing Zhongshan Golden Bridge Technology Co. (Beijing, China); the Ultrapure RNA extraction kit (CW0581), HiFi-MMLV cDNA First Strand synthesis kit (CW0744), UltraSYBR Mixture (with Rox) (CW0956), and DNase I (CW2090A) were purchased from Beijing Kangwei Century Biotechnology Co. (Beijing, China); immunoassay kits (IL-23, IL-17, IL-1, TNF-α, no. 870257) were purchased from LightArray Biotech Co. (Shanghai, China); and DMS (62575) was purchased from Cayman Chemical (Ann Arbor, MI, USA).
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10

Western Blot Analysis of Spinal Cord Iba1 and SIRT2

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Western blots were implemented as previously described (19) (link). Spinal cord (right dorsal part of L4-L5) specimens underwent homogenization with lysis buffer. Protein quantitation in lysates was assessed with the bicinchoninic acid (BCA) Protein Assay Kit (Sigma, USA). Equal quantities (50 µg) of total protein underwent separation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and electro-transfer onto a nitrocellulose membrane. Blocking was implemented with 5% fat-free milk at ambient, followed by overnight incubation with primary antibodies targeting Iba1 (1:600, ab15690, Abcam) and SIRT2 (1:2000, ab211033, Abcam), respectively. Following three washes, the membrane underwent incubation with horseradish peroxidase-linked goat anti-mouse (1:5000, ab97040, Abcam) or goat anti-rabbit (1:5000, ab7090, Abcam) secondary antibodies (1 h at ambient). The electrochemiluminescence system (Millipore Immobilon) was utilized for detection. Immunoreactive bands were quantitated with Image-Pro Plus 6.0 (Media Cybernetics, USA), and data were normalized to β-actin expression.
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