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31 protocols using ab108937

1

Protein Expression Analysis Protocol

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Cell lysates were lysed by RIPA buffer (Sigma-Aldrich, USA) and moved into tubes for later use. After being washed with PBS twice, the proteins from cells were extracted. Proteins were partitioned on a sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Next, the cells were moved to a PVDF membrane (Millipore, Billerica, MA, USA). Blots were carried out with anti-Caspase-3, dilution, 1:500, Abcam, ab13585; anti-Caspase-8, dilution, 1:1,000, Abcam, ab32397; anti-Caspase-9, dilution, 1:2,000, Abcam, ab202068; anti-Ki67, dilution, 1:5,000, Abcam, ab92742; anti-Cyclin D1, dilution, 1:10,000, Abcam, ab134175; anti-DLL1, dilution, 1:500, Abcam, ab10554; anti-DLL3, dilution, 1:500, Abcam, ab63707; anti-Notch1, dilution, 1:500, Abcam, ab65297; anti-HES1, dilution, 1:500, Abcam, ab108937; anti-GAPDH, dilution, 1:10,000, Abcam, ab181602. After that, horseradish peroxidase-conjugated secondary antibodies (bs-0293M; BIOSS, Beijing, China) were added to the cells and incubated at room temperature for 1 h. The bolts were analyzed by chemiluminescent reagents (Millipore, Billerica, MA, USA).
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2

Western Blot Analysis of Key Proteins

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Total protein extracts were obtained with radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime) and then quantified by a bicinchoninic acid (BCA) kit (Beyotime). The proteins separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) on a 12% gel were transferred onto polyvinylidene fluoride (PVDF) membranes, followed by being impeded in 5% skimmed milk at room temperature for 2 h. Subsequently, the membranes were incubated with primary antibodies against ENAH (Abcam, 1:1000, ab124685), Ki67 (Abcam, 1:5000, ab254123), proliferating cell nuclear antigen (PCNA) (Abcam, 1:1000, ab92552), SF3B4 (Abcam, 1:2000, ab183483), matrix metallopeptidase 2 (MMP2) (Abcam, 1:1000, ab92536), matrix metallopeptidase 9 (MMP9) (Abcam, 1:1000, ab76003), Notch1 (Abcam, 1:1000, ab52627), hes family bHLH transcription factor 1 (HES1) (Abcam, 1:1000, ab108937), mastermind like transcriptional coactivator 1 (MAML1) (Abcam, 1:1000, ab155786) and GAPDH (Abcam, 1:1000, ab8245) overnight at 4°C and further incubated with HRP-conjugated secondary antibody (Abcam, 1:1000; ab7090) at room temperature for 2 h. The resulting bands were visualized under enhanced chemiluminescence (MilliporeSigma). Protein levels were quantified using Image J software (version 1.46; National Institutes of Health).
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3

Comprehensive Protein Expression Analysis

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Total protein from cells was extracted with RIPA buffer (abs9229, Absin, China). The extracted protein was centrifuged and then quantified with the BCA kit (pc0020, Solarbio, China). After electrophoresis, they were electrotransferred onto the nitrocellulose membrane. Then, 5% nonfat milk was taken to block the membrane. After rinsing, the blocked membrane was subjected to primary antibodies at 4°C all night. The next day, an antirabbit secondary antibody (ab7090, Abcam, UK) was added. After reacting at 37°C for 1 h, a color reagent (1705061, BIO-RAD, USA) was taken to visualize the blots. Finally, the blots were developed in ChemiScope 3300 mini equipment (Clinx, China). The primary antibodies of collagen II (1: 1000, ab34712), fibronectin (1: 1000, ab268020), α-SMA (1: 50000, ab124964), Notch1 (1: 2000, ab52627), Jag1 (1: 500, ab7771), HEY1 (1: 3000, ab154077), HES1 (1: 1000, ab108937), TGF-β (1: 1000, ab215715), E-cadherin (1: 50000, ab40772), vimentin (1: 5000, ab92547), N-cadherin (1: 20000, ab76011), collagen I (1: 1000, ab260043), and GAPDH (ab181602) were bought from Abcam (UK).
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4

Immunohistochemical Evaluation of Transplanted Tumors

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The transplanted tumors were surgically removed until the tumor volume reached 100 mm3, and then fixed in 10% formalin. Then, the tumors derived from the donor’s pelvic lymph node and the transplanted tumors were subjected to routine hematoxylin and eosin (HE) staining and staining for other markers, including P16 (1:50, ab51243, Abcam, Cambridge, UK), P53 (1:2000, ab32389, Abcam), ER (1:800, 21244-1-AP, Proteintech), PR (1:200, 25871-1-AP, Proteintech, Chicago, IL, USA), PAX8 (1:200, 10336-1-AP, Proteintech), and WT1 (1:500, ab89901, Abcam). Microscopic slides were reviewed by a senior gynecology-dedicated pathologist (Prof. Yang).
Similarly, immunohistochemistry (IHC) was conducted to assess the expression of Ki67 (1:200, AF0198, Affinity, San Francisco, CA, USA), CyclinD1 (1:250, ab134175, Abcam), Hes1 (1:200, ab108937, Abcam), N-cadherin (1:200, #13116, Cell Signaling Technology, Danvers, MA, USA), vimentin (1:200, #5741, Cell Signaling Technology) and CSF3 (1:200, 17185-1-AP, Proteintech) in the tumors extracted from mice. The kidney and liver were also removed for HE staining to evaluate the toxicity of viscera.
Finally, the expression of CSF3 in the corresponding lymph nodes samples from 10 ovarian cancer patients was evaluated by IHC. The scoring criteria for staining intensity were described in our previous research [33 (link)].
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5

Western Blot Analysis of Melanoma Proteins

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Western blot assays were performed as previously described.17 (link) In brief, total proteins from melanoma cells were extracted in RIPA buffer (Sigma-Aldrich; Merck KGaA) on ice (the lysis buffer contain phosphatase and protease inhibitors), Then, the lysates were prepared with lysis buffer (Beyotime), and the protein concentration was determined via the BCA assay. Approximately 50ug of protein was loaded into a 12% SDS/Polyacrylamide gel. Electrophoresis was carried out at 80 V for 20 min followed by 40 min at 120 V. Western blot analysis was performed following protein transfer to a PVDF membrane. After blocking with 5% nonfat milk, the membranes were incubated at 4 °C overnight with SOX10 (ab227684, Abcam), Notch1 (ab52627, Abcam), NICD (ab52301, Abcam), Hes1 (ab108937, Abcam), and GAPDH (ab8245, Abcam) antibody. Membranes were visualised with Electrochemiluminescence Plus Detection Reagents.
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6

Western Blot Analysis of Liver Proteins

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The liver tissue was lysed in RIPA buffer (CatNo: R0010, Solarbio), and the total protein concentration was determined using a BCA kit (CatNo. 23225, Thermo Scientific). 30 μg protein per lane were separated from a 6-15% sodium dodecyl sulfate-polyacrylamide gel (CatNo: 28312, Thermo Scientific) and further transferred to a polyvinylidene fluoride (PVDF) membrane (CatNo: 24585 Thermo Scientific). The membrane was blocked with 5% BSA for one hour. The membrane was then incubated overnight at 4°C with primary antibodies against MMP9 (1:500, CatNo: ab76003, Abcam), NOTCH 1 1 (1:1000, CatNo: ab52627, Abcam), Hes1 (1:1500, CatNo: ab108937, Abcam), Math1 (1:1000, CatNo, ab249467, Abcam), and GAPDH (1:10000, CatNo: 14C10, Cell Signaling Technology). After three washes with TBS buffer containing 0.1% Tween-20 (TBST), the membrane was incubated with secondary antibodies conjugated horseradish peroxidase (CatNo: ab2116, Abcam) for one hour. After three times washing with TBST, a HyGLO-HRP kit (CatNo: 32106, Thermo Scientific) was used to visualize the bands.
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7

Quantification of Transcription Factor Proteins

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For the determination of transcription factor protein abundance, protein components of lysates (100 µg) were separated by SDS-polyacrylamide gel electrophoresis on 12% (w/v) polyacrylamide mini gels, containing 0.1% (w/v) SDS, whilst for the determination of SGLT1 protein abundance, protein contents of BBMV (20 µg) were separated using 8% (w/v) polyacrylamide mini gels. Membranes were incubated with either our custom-made antibody to SGLT140 (link), 41 (link) or with antibodies to Neurogenin 3 (ab38548, Abcam, Cambridge, UK), NeuroD1 (ab109224), HATH1 (ab168374) and Hes1 (ab108937). Immunoreactive bands were detected by affinity purified horseradish peroxidase-linked anti-rabbit secondary antibody (DAKO Ltd, Cambridge, UK) and visualised using Immobilon Western Chemiluminescent HRP Substrate (Millipore, Hertfordshire, UK) and Bio-Max Light Chemiluminescence Film (Sigma-Aldrich, Poole, Dorset, UK). The intensity of the immunoreactive bands was quantified using scanning densitometry (Total Lab, Newcastle-upon-Tyne, UK). β-actin protein abundance was used as a loading control.
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8

Western Blot Analysis of Protein Expression

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Total protein was extracted using the lysis buffer (Pierce, Rockford, IL, USA) and quantified through the Bradford method. Each 50-μg protein sample was separated by SDS-PAGE and transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA), and the membranes were incubated with antibodies against HES1 (1:500 dilution, Abcam, ab108937, Cambridge, UK), PTEN, p-AKT, AKT, E-cadherin, N-cadherin, and vimentin (Cell Signalling Technology) and anti-β-actin (Abcam, Cambridge, UK) overnight at 4°C. After incubation, the bound proteins were determined by ECL (Pierce) using a BioImaging System (UVP Inc., Upland, CA, USA).
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9

Western Blot Analysis of Notch Signaling

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The radio-immunoprecipitation assay (RIPA) buffer (Beyotime) was used to lyse cells or tissues. Samples of extracted protein were separated on 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and electroblotted to nitrocellulose filter membranes (Millipore). Membranes were immersed in 5% non-fat milk for 2 h prior to incubation with the primary antibodies, including Notch1 (ab8925; 1:1000 dilution; Abcam, Cambridge, MA, USA), Hes1 (ab108937; 1:1000 dilution; Abcam), Hey2 (ab86010; 1:1000 dilution; Abcam), B-cell lymphoma-2 (Bcl-2; #4223S; 1:1000 dilution; Cell Signaling Technology, Danvers, MA, USA), or Bcl-2-Associated X (Bax; #5023S; 1:1000 dilution; Cell Signaling Technology), with GAPDH (ab181602; 1:2500 dilution; Abcam) as control. Horseradish peroxidase-conjugated secondary antibodies (ab150077; 1:1000 dilution; Abcam) were added to membranes at a dilution ratio of 1:4000, and then incubated for 1 h. The antibody binding was visualized using the Clarity™ Western ECL Substrate Kit (Bio-Rad) under the Bio-Rad ChemiDoc MP system (Bio-Rad).
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10

Proteins Analysis of IEC-6 Cells

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Total proteins from IEC-6 cells were extracted by RIPA lysis buffer (Beyotime Institute of Biotechnology) and the quantification of these proteins was conducted using BCA kits (Thermo Fisher Scientific, Inc.). Exposed to 10% SDS-PAGE, the proteins were then transferred onto PVDF membranes. After the procedure of impeding membranes with 5% nonfat milk and incubating with corresponding primary antibodies against ANGPT2 (Abcam, ab155106), barrier dysfunction-related proteins (ZO-1 (Abcam, ab221547), occludin (Abcam, ab167161), claudin-1 (Biorbyt, orb10447)), ERs-related proteins (GRP79 (Abcam, ab21685), CHOP (Biorbyt, orb314857), p-PERK (Biorbyt, orb474911), PERK (Biorbyt, orb338886)), Notch signaling-related proteins (Notch1 intracellular domain (NICD1) (Abcam, ab167441), HES1 (Abcam, ab108937)), and GAPDH (Abcam, ab9485) at 4°C overnight, secondary antibodies were applied to incubate membranes for 2 h. Finally, the protein bands were photographed using enhanced chemiluminescence (ECL).
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