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A9046

Manufactured by Merck Group
Sourced in United States

A9046 is a piece of lab equipment manufactured by Merck Group. It is designed for general laboratory use, with its core function being to perform controlled heating and cooling of samples. The device specifications and technical details are available upon request.

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7 protocols using a9046

1

Measurement of Avian IgY Levels

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Total IgY, the avian equivalent to mammalian IgG, was measured using a sensitive ELISA with commercial anti-chicken antibodies38 (link),40 (link). Ninety six-well high-binding ELISA plates (82.1581.200, Sarstedt) were coated with 100 µl of diluted serum sample (2 samples per bird 1:16,000 diluted in carbonate–bicarbonate buffer) and incubated first for 1 h at 37 °C and then overnight at 4 °C. After incubation, the plates were washed with a 200 µl solution of phosphate buffer saline and PBS–Tween, before 100 µl of a solution of 1% gelatine in PBS–Tween was added. Plates were then incubated at 37 °C for 1 h, washed with PBS–Tween and 100 µl of polyclonal rabbit anti-chicken IgY conjugated with peroxidase (A-9046, Sigma) at 1:250 (v/v) was added. Following 2 h incubation at 37 °C, the plates were washed again with PBS–Tween three times. After washing, 100 µl of revealing solution [peroxide diluted 1:1000 in ABTS (2,20-azino-bis- (3-ethylbenzthiazoline-6-sulphonic acid))] was added, and the plates were incubated for 1 h at 37 °C. The final absorbance was measured at 405 nm using a photometric microplate reader (μQuant Microplate Spectrophotometer, Biotek) and subsequently defined as total serum IgY levels41 (link).
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2

Immunoblot Analysis of Cell Lysates

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To analyze total cell lysates by immunoblot, 1.2 × 106 cells were lysed in SDS–PAGE sample buffer, boiled for 5 min, and sonicated to shear DNA. Proteins were separated on 4–20% gradient gels (Mini-PROTEAN TGX; Bio-Rad, Hercules, CA) and transferred to nitrocellulose membrane (Bio-Rad). After blocking with 10% (vol/vol) adult bovine serum and 0.2% Triton X-100 in PBS for 30 min, the membrane was incubated with appropriate primary antibodies: chicken anti-BioID2 (1:5000; BID2-CP-100; BioFront Technologies) or rabbit polyclonal anti-hemagglutinin (1:2000; Ab9110; Abcam). The primary antibodies were detected using horseradish peroxidase (HRP)–conjugated anti-chicken (1:40,000; A9046; Sigma-Aldrich) or anti-rabbit (1:40,000; G21234; Thermo Fisher Scientific). The signals from antibodies were detected using enhanced chemiluminescence via a Bio-Rad ChemiDoc MP System (Bio-Rad, Hercules, CA). Following detection of each antibody, the membrane was quenched with 30% H2O2 for 30 minutes. To detect biotinylated proteins, the membrane was incubated with HRP-conjugated streptavidin (1:40,000; ab7403; Abcam) in 0.2% Triton X-100 in PBS for 45 min.
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3

Quantifying Purified Viral Antigens

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Purified viruses were assessed by enzyme-linked immunosorbent assay (ELISA) with dog serum against RV or chicken antibody against NDV along with horseradish peroxidase-conjugated rabbit anti-dog IgG (A6792; Sigma) or rabbit anti-chicken IgG (A9046; Sigma). We determined the protein concentrations to standardize the amount of loading (10 µg, 5 µg, 2.5 µg, 1.25 µg, 0.625 µg, 0.3125 µg, 0.15625 µg, and 0.078125 µg) of duplicate samples of the purified virions on the ELISA plate. Data was collected by using an enzyme standard instrument (Model 650; Bio-Rad Laboratories, USA).
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4

Western Blot Analysis of Recombinant Proteins

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Total protein extracts were run on 10% SDS-PAGE and transferred to a nitrocellulose membrane. Membranes were incubated with blocking buffer (5% (w/v) dried milk in TPBS/TBST), rinsed twice in TPBS/TBST and further incubated with blocking buffer supplemented with anti-SigG1 polyclonal quail antibody (final dilution 1:1000) or tetra-his mouse monoclonal antibody (Qiagen), final dilution 1:5000. After incubation, the membranes were rinsed twice in TPBS/TBST, and incubated with secondary antibody—rabbit anti-chicken IgY (IgG) coupled to peroxidase (A9046, Sigma-Aldrich, MI, USA) or anti-mouse IgG conjugated to HRP (Santa Cruz Biotechnology, CA, USA). Signals were revealed with Prime Plus ECL detection kit (Bio-Rad).
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5

Western Blot Analysis of BioID2 Biotinylation

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Total cell lysates (1.2 × 106 cells) for WB were prepared in SDS–PAGE sample buffer, boiled for 5 min, and sonicated to shear DNA. Proteins were separated using 4 to 20% gradient gels (Mini-PROTEAN TGX; Bio-Rad) and transferred to nitrocellulose membrane (Bio-Rad). After blocking with 10% (vol/vol) adult bovine serum and 0.2% Triton X-100 in PBS for 30 min, the membrane was incubated with chicken anti-BioID2 primary antibody (1:5000; BID2-CP-100; BioFront Technologies). Anti-BioID2 primary antibody was detected using horseradish peroxidase–conjugated anti-chicken (1:40,000; A9046; Sigma-Aldrich) antibody. Biotinylated proteins were detected with horseradish peroxidase-conjugated streptavidin (1:40,000; ab7403; Abcam). The signals from antibodies were detected using enhanced chemiluminescence via a UVP BioImaging System (UVP).
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6

Immunoblot Analysis of Cell Lysates

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To analyze total cell lysates by immunoblot, 1.2 × 106 cells were lysed in SDS-PAGE sample buffer, boiled for 5 min, and sonicated to shear DNA. Proteins were separated on 4–20% gradient gels (Mini-PROTEAN TGX; Bio-Rad, Hercules, CA, USA) and transferred to nitrocellulose membrane (Bio-Rad). After blocking with 10% (vol/vol) adult bovine serum and 0.2% Triton X-100 in PBS for 30 min, the membrane was incubated with appropriate primary antibodies: chicken anti-BioID2 (1:5000; BID2-CP-100; BioFront Technologies, Tallahassee, FL, USA) or rabbit polyclonal anti-hemagglutinin (1:2000; Ab9110; Lot#GR218331-6, Abcam). The primary antibodies were detected using horseradish peroxidase (HRP)–conjugated anti-chicken (1:40,000; A9046; Lot#015M4856V, Sigma-Aldrich, St. Louis, MO, USA) or anti-rabbit (1:40,000; G21234; Lot#2156243, Thermo Fisher Scientific). The signals from antibodies were detected using enhanced chemiluminescence via a Bio-Rad ChemiDoc MP System (Bio-Rad, Hercules, CA, USA). Following detection of each antibody, the membrane was quenched with 30% H2O2 for 30 min. To detect biotinylated proteins, the membrane was incubated with HRP-conjugated streptavidin (1:40,000; ab7403; Lot#GR305788-2, Abcam) in 0.2% Triton X-100 in PBS for 45 min.
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7

Indirect ELISA for IgY Quantification

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IgY concentration was determined by means of an indirect ELISA (enzyme-linked immunoassay) method based on that of Vansofla et al. (2021) with some modifications. We used 96-well plates that were coated with IgG goat
anti-IgY (SAB3700195 Sigma-Aldrich, 2.5  µ g m L -1) diluted in
bicarbonate buffer (Na 2 NO 3) with a pH of 9.6 at 4  C overnight.
The, the plates were washed three times using phosphate-buffered saline (PBS)
containing Tween 20 (PBST-20, pH 7.4) and blocked with 100  µ L of
2 % bovine serum albumin (BSA) for 1 h at 37  C. Serum samples were diluted at a ratio of 1  :  100
and were added to each well and incubated for 1 h at 37  C.
The plates were washed three times with PBST, and 100  µ L of secondary
antibody IgG rabbit anti-IgY (A9046 Sigma-Aldrich) was added to each well
conjugated with a peroxide enzymes. The plate was incubated for 1 h at
37  C and then washed three times using PBST. Then 100  µ L
of tetramethylbenzidine (TMB) substrate solution (T0440 Sigma-Aldrich) was added to each well.
Finally, the reaction was stopped with stop solution H 2 SO 4 , and
the absorbance was read at 450 nm on a microplate reader (Bio-Rad, USA).
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