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Si-PKR is a small interfering RNA (siRNA) designed to target and silence the expression of the PKR gene. PKR is a serine/threonine-protein kinase that plays a role in the cellular response to viral infection and other stress stimuli. The core function of Si-PKR is to provide a tool for researchers to investigate the biological functions of PKR in various experimental systems.

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3 protocols using si pkr

1

Downregulation of PKR by siRNA

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ON-TARGET plus SMART pool small-interfering RNA (siRNA) for si-Control was bought from Dharmacon Research. si-PKR was bought from Santa Cruz. Transfections of si-PKR and si-Control were performed using INTERFERin siRNA transfection kit (Polyplus Transfection, Huntingdon, UK) according to the protocol.
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2

Cell Line Characterization and Manipulation

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U87, A172, and HEK293T (293T) cells were purchased from American Type Culture Collection. HeLa cells stably expressing empty vector (EV), 6His-SUMO 1 and 6His-SUMO 2, were obtained from Dr. RT Hay and have been described previously [37 (link)]. Cells were cultured in DMEM supplemented with 10% FBS and 1% penicillin-streptomycin (ThermoFisher Scientific). GBM34 and GBM44 GSCs obtained from Dr. Mariano Viapiano (Brigham and Women’s Hospital, Boston, MA) were maintained as neurospheres as described [27 ]. All cell lines were screened for mycoplasma using the ATCC Universal Mycoplasma Detection Kit (catalogue # 30- 121 1012K) every 4 months. Early passage primary MEFs from wild-type, MyD88−/−, Rig-I−/−, Mda5−/−, Lgp2−/−, MAVS−/−, Tmem173−/−, and Trif−/− mice were cultured as previously described [51 (link), 52 (link)]. All cell lines were authenticated by routine morphological and growth analysis and by western blotting. TMZ was obtained from Sigma-Aldrich. DNA transfection was performed using TransIT LT1 (Mirus) and siRNA transfection with Oligofectamine (Invitrogen). Cycloheximide (CHX) and MG132 were from Cayman Chemical. The following siRNAs were used: siGENOME non-targeting siRNA#3 (Dharmacon), siGENOME Smartpool si-LGP2 (Dharmacon), si-TLR3 (sc-36685, Santa Cruz), and si-PKR (sc-36263, Santa Cruz).
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3

siRNA Transfection of PKC and PKR

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ON-TARGET plus SMART pool small-interfering RNAs (siRNAs) for si-Controls were obtained from Dharmacon Research (Lafayette, Colorado). si-PKC and si-PKR were purchased from Santa Cruz. Transient transfection was performed using INTERFERin siRNA transfection reagent (Polyplus Transfection, Huntingdon, UK) according to the manufacturer's guide.
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