Total cellular RNA was isolated using
TRIzol Reagent (#15596018; Thermo Fisher Scientific). The RNA concentration was measured using
Nanodrop 2000 (Thermo Fisher Scientific, USA). Total RNA was reverse transcribed into cDNA using
Novoscript Plus All in one First Strand cDNA Synthesis SuperMix (#E047-01S; Novoprotein) according to the manufacturer’s instructions. Quantitative reverse transcription PCR was performed per the manufacturer’s protocol on the Bio-RAD CFX Connect
TM system using
SYBR Green Master Mix (#E096-01; Novoprotein) and gene-specific primers. The qPCR primers sequences are as follows:
HOXC5-fwd: 5′-AGAGCCCCAATATCCCTGC-3′,
HOXC5-rev: 5′-CGGTGGGAAAGTGATGCTT-3′,
VENTX-fwd: 5′-CCGTCAGCATCAAGGAGG-3′,
VENTX-rev: 5′-CTGGACCTCTGAGAGCTGC-3′,
ISL1-fwd: 5′-TACGGGATCAAATGCGCCAA-3′,
ISL1-rev: 5′-CACACAGCGGAAACACTCGAT-3′,
OTP-fwd: 5′-GCACAGCTCAACGAGTTGGA-3′,
OTP-rev: 5′-GTCAGCCCGATACGCAGTG-3′.
Long Z., Sun C., Tang M., Wang Y., Ma J., Yu J., Wei J., Ma J., Wang B., Xie Q, & Wen J. (2022). Single-cell multiomics analysis reveals regulatory programs in clear cell renal cell carcinoma. Cell Discovery, 8, 68.