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Proteome profiler human pluripotent stem cell array kit

Manufactured by R&D Systems
Sourced in United States

The Proteome Profiler Human Pluripotent Stem Cell Array Kit is a multiplex assay designed to detect the relative levels of 36 proteins associated with human pluripotent stem cells. The kit includes a membrane-based antibody array, detection reagents, and necessary components to perform the assay.

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5 protocols using proteome profiler human pluripotent stem cell array kit

1

Stem Cell Marker Profiling in Cancer Cells

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The proteome profiler human pluripotent stem cell array kit (R&D Systems) was used to evaluate expression of stem cell markers, according to the manufacturer’s instructions. Briefly, UM-SCC-1, UM-SCC-22A, or UM-SCC-22B cells were plated, serum-starved overnight, and treated with 0–1 µM Cisplatin (Sigma) and/or 0–0.1 µM Tocilizumab (Genentech) for 24 h. Lysates were extracted and incubated with the antibody-spotted array following the manufacturer’s instructions. Biotinylated detection antibodies and streptavidin-horseradish peroxidase reagents enabled subsequent signal detection by chemiluminescence. The stem cell array was exposed on film and relative integrated densities of each dot were quantified using ImageJ software (NIH, Bethesda, MA, USA).
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2

Pluripotency Marker Profiling for Cloning

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To corroborate cloning effectiveness, specific protein markers expressed by pluri- or multipotent precursors were detected by using the Proteome Profiler™ Human Pluripotent Stem Cell Array Kit (R&D Systems; Minneapolis, MN, USA). It consists of nitrocellulose membranes with duplicate spots of 15 different preadsorbed antibodies. Cloned cells in passage 24 and cells of the heterogeneous primary culture in passage 6 were seeded in 75 cm2 flasks (Figure 1). At 80% confluence, cells were scraped with the kit's lysis buffer and processed following the instructions given by the supplier. Briefly, total protein was determined [34 (link)] to add 150 μg protein by membrane. Protein markers were detected by chemiluminescence with a ChemiDoc™ MP Imaging System and analyzed with the Image Lab™ software (Bio-Rad Laboratories, Hercules, CA, USA). The protein profiles were determined in two membranes by culture; therefore, densitometric data of 4 spots by protein were compared between cultures with a Mann-Whitney U test.
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3

Quantifying Pluripotent Stem Cell Markers

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Stem cell-specific marker proteins were measured using the Proteome Profiler Human Pluripotent Stem Cell Array Kit (R&D Systems, Minneapolis, MN) according to the manufacturer’s instructions. In brief, the hiPSCs were seeded on a feeder layer of MEF cells (ReproCELL Inc., Kanagawa, Japan) and seeded at 1.5 × 105 cells per 10-cm plate. iPSCs were cultured in 100 mm dishes in Primate ES Cell Medium (ReproCELL Inc., Kanagawa, Japan) to ∼80% confluence. To prepare sampling hiPSCs for cell assay, the hiPSCs were first detached from the feeder layer and partially dissociated as described for maintenance passage. Next, the contaminating MEF cells were removed by incubating the cell suspension on a gelatin-coated plate at 37°C for 2 h in Primate ES Cell Medium (ReproCELL Inc., Kanagawa, Japan) with 10 μM Y-27632(257–00511: FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan) to ensure the high purity of the hiPSCs. 1 mL cell lysate from the 100 mm dish was prepared using an EzRIPA Lysis kit according to the manufacturer’s instructions (ATTO, Tokyo, Japan).
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4

Stem Cell Markers in Osteosarcoma CSCs

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To assess expression of stem cell-related markers in CSC from osteosarcoma that were co-cultured with MSC and in respect to parental cell line, protein extracts were obtained and quantified with Proteome Profiler Human Pluripotent Stem Cell Array Kit (R&D) lysis buffer. Equal amounts of protein lysates (200 μg) were quantified by Bradford, and then loaded on each membrane. According to manufacturer’s instructions, each sample was loaded as duplicate. The signal of each spot was quantified by dedicated software for densitometric evaluation (VisionWorksLS Analysis Software, Biospectrum, UVP).
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5

Comprehensive Protein Expression Profiling

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The expression of stem cell- cancer- and stress-related proteins was evaluated with Proteome Profiler Human Pluripotent Stem Cell Array Kit (#ARY010), Proteome Profiler Human XL Oncology Array (#ARY026) and Proteome Profiler Human Cell Stress Array Kit (#ARY018) all from R&D Systems. Protein list is available in Additional file 4: Table S3. Further details are provided in Supplementary Methods, Additional file 1.
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