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10 protocols using anti nrf2

1

Western Blot Analysis of Cellular Proteins

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Total proteins were extracted by RIPA buffer (Beyotime, Shanghai, China) supplemented with PMSF (Beyotime, Shanghai, China). The protein concentration was measured by the BCA Protein Assay Kit (Thermo Fisher, Waltham, USA). Then, equal amounts of protein were loaded on 8–12% SDS-PAGE gels and transferred onto a PVDF transfer membrane (Millipore, Massachusetts, USA). After blocking with 5% skimmed milk solution, the membranes were incubated with specific primary antibodies overnight at 4°C followed by further incubation with the secondary antibody at room temperature for 2 h. Both primary and secondary antibodies were purchased from Thermo Fisher (Waltham, USA), including anti-β-actin, anti-Nrf2, anti-HO-1, anti-p-NF-κB, anti-IL-1β, anti-TNF-α, anti-Bip, anti-calpain-2, anti-active caspase-12, anti-active caspase-3, anti-Bax, anti-Bcl-2, anti-ACAN, anti-Col-II, anti-Col-I, anti-MMP-13, anti-aggrecanase 1, and secondary antibody IgG. Finally, the protein bands were detected using the ECL Plus Reagent (Thermo Fisher, Waltham, USA), and their densitometry was analyzed with the ImageJ software version 8.0(Bio-Rad, Hercules, USA). With β-actin as control, the expression of total protein was normalized.
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2

Alginate Oligosaccharide Modulators of Nrf2 Pathway

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Alginate oligosaccharides (AOSs) (91.4%, ≤4000 Molecular Weight Da) were purchased from Qingdao BZ Oligo Biotech Co., Ltd. (Qingdao, China, Batch N° 2022032801AYF). Nrf2 inhibitor ML385 (#HY-100523) was purchased from MedChemExpress (Monmouth Junction, NJ, USA). Hydrogen peroxide was purchased from Merck Millipore (Darmstadt, Germany #107210). ML385 is soluble in DMSO, and Hydrogen peroxide and AOS are soluble in aqueous solutions, such as water and culture media. MTS assay and Improm IITM kit were purchased from Promega (Madison, WI, USA). Antibodies, anti-Nrf2 (#D1Z9C), antiHO-1 (#E3F4S), and anti-KEAP1 (#D6B12) were purchased from Cell Signaling Technologies (Danvers, MA, USA). The antibodies anti-β-Actin (MA5-15739), anti p62/SQSTM1 (#PA5-20839), and anti-Nrf2 (#PA527882), as well as Alexa Fluor 488 anti-rabbit secondary antibody (#A11008), were obtained from Thermo Fisher Scientific (Eugene, OR, USA) The TRIZOL reagent (#15596018), DNase 1U (Turbo DNA-freeTM kit) (#AM1907), DCFH-DA (2′,7′-dichlorofluorescein diacetate) (#D6883), and PierceTM BCA Protein Assay kit (#23227) were acquired from Thermo Fisher Scientific.
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3

Western Blot Analysis of Nrf2, Antioxidant, and Inflammatory Pathways

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Total proteins were extracted from BV-2 cells by RIPA lysis buffer and quantified by BCA Protein Assay kit (ThermoFisher, USA). 20 μg of each sample was separated by 12% SDS-PAGE and then transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore, USA). The membranes were then blocked with 5% (w/v) fat-free milk for 1 hr, followed by incubation overnight at 4°C with primary antibodies including anti-Nrf2 (65 kDa, rabbit, 1:1000), anti-HO-1 (30 kDa, rabbit, 1:500), anti-SOD (25 kDa, rabbit, 1:2000), anti-TLR4 (95 kDa, rabbit, 1:150), anti-IL-6 (24 kDa, rabbit, 1:1000), anti-IL-1β (31 kDa, rabbit, 1:1000), anti-TNF-α (17 kDa, rabbit, 1:1000), anti-p-NFκB (69 kDa, rabbit, 1:500), anti-Bax (22 kDa, rabbit, 1:1000), anti-Bcl-2 (26 kDa, rabbit, 1:1000), anti-cl-casp-3 (17 kDa, rabbit, 1:1000), which were all purchased from ThermoFisher (USA). Next, the primary antibodies were washed away by 1×PBS). The membranes were then incubated with HRP-labeled anti-rabbit secondary antibodies (1:10,000) for 1 hr at room temperature. After another washing step by 1×PBS, the membranes were rinsed in the Western Lighting Plus-ECL solutions (Perkin Elmer, USA), and finally the immunoreactive bands were detected using CL-XPosure™ Film (ThermoFisher, USA).
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4

Immunohistochemical Analysis of Oxidative Stress Markers

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For IHC, the deparaffinized and hydrated sections were treated with 0.05 M citrate buffer (pH 6.8) for antigen retrieval followed by 0.3% hydrogen peroxide. The nonspecific antigen-antibody binding was blocked through the addition of normal serum for 20 min. The sections were washed in PBS and probed overnight at 4 °C with anti-NF-κB p65 (ThermoFisher, Waltham, MA, USA), anti-Bax (Abcam, Cambridge, MA, USA), anti-Bcl-2 (Abcam, Cambridge, MA, USA), anti-caspase-3 (ThermoFisher, Waltham, MA, USA), and anti-Nrf2 (ThermoFisher, Waltham, MA, USA). After washing in PBS, anti-mouse secondary antibodies were added to the slides, and DAB was used for color development. Then, the sections were counterstained with Mayer’s hematoxylin, and examined under a light microscope. The staining labelling indices of the caspase-3 and NF-κB p65 were presented as a percentage equivalent field of positive control expression. The immunostaining intensity of anti-Bcl-2 and anti-Nrf2 antibodies was determined through a percent of the positive area using image J analysis software (NIH, Bethesda, MD, USA).
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5

Histopathological and Molecular Analyses of Liver

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Liver samples fixed in 10% NBF for 24 h were processed for paraffin embedding and 5-µm sections were cut using a microtome. The sections were stained with hematoxylin and eosin (H&E) as previously described [63 ]. To evaluate changes in the expression levels of iNOS, Bax, Bcl-2, caspase-3, and Nrf2, sections from the liver were dewaxed and 0.05 M citrate buffer (pH 6.8) was used for antigen retrieval. The slides were treated with 0.3% hydrogen peroxide (H2O2), washed in phosphate-buffered saline (PBS), and probed with anti-iNOS (ThermoFisher Scientific, Waltham, MA, USA; 1:20 dilution), anti-Bax (Abcam, Cambridge, MA, USA; 1:100 dilution), anti-Bcl-2 (Abcam, Cambridge, UK; 1:100 dilution), anti-caspase-3 (ThermoFisher Scientific, Waltham, MA, USA; 1:100 dilution), and anti-Nrf2 (ThermoFisher Scientific, Waltham, MA, USA; 1:100 dilution) overnight at 4 °C. The slides were washed in PBS, incubated with secondary antibodies, and color was developed by incubation with DAB in H2O2 [64 ]. Mayer’s hematoxylin was used for counterstaining, and the slides were visualized under a light microscope. The intensity of the developed color was determined in 6 fields/slide using ImageJ (NIH, Bethesda, MD, USA).
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6

Immunohistochemical Analysis of Apoptosis and Oxidative Stress Markers

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By immersing in xylene and descending graded concentration of ethanol solutions, paraffin-embedded sections were sliced, deparaffinized, and hydrated before being microwave antigen retrieving treated. After that, a 0.3 % hydrogen peroxide per methanol solution was utilized to stop endogenous peroxidase activity. The prepared slides were cooled at ambient temperature, and nonspecific binding was blocked with normal serum for 20 min at ambient temperature. Then, they were blended with anti-Bax, anti-caspase 3, anti-Nrf2, anti-Bcl-2 (all purchased from Invitrogen, Waltham, MA, USA), and anti-NF-κB p65 (purchased from Santa Cruz Biotechnol., Dallas, TX, USA) and preserved 24 hrs in the refrigerator at 4 °C. The 2ry antibodies were smeared after washing the slides with PBS several times. The color expansion was prompted via incubation with 3,3′-diaminobenzidine-tetrahydrochloride-H2O2 solution, and then all prepared sections were stained with Mayer’s hematoxylin and examined by light microscopy. Staining intensity was estimated and achieved as a positive expression% in 1000 cells per 8 HPF for NF-ĸB p65, caspase 3, and Bax, while Nrf2 and Bcl-2 immunostaining was verified via the zone of + ve expression by applying ImageJ evaluation software (NIH, Bethesda, MD, USA).
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7

Quantitative Immunohistochemistry Analysis of NRF2 and ACSS2 in ESCC

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Deparaffinized sections were pre-treated to retrieve antigens before detection with a rabbit polyclonal anti-NRF2 (Invitrogen) at a 1:200 dilution, and a rabbit polyclonal anti-ACSS2 (Sigma-Aldrich) at a 1:25 dilution. Cytokeratin 5 immunohistochemistry with anti-CK5 (Invitrogen) was used to validate the antigenicity of human tissue sections.
Human ESCC formalin-fixed paraffin-embedded tissue sections were decoded without patient information. IHC staining was scored based on a positive staining area and staining intensity. Numeric scores were provided for staining area and staining intensity: 3 for high intensity or a high percentage of positive staining (>75% cancer cells); 2 for moderate staining or moderate percentage (50–75%); 1 for low staining intensity or low percentage of positive staining (25–50%); and 0 for no staining. A combined numerical score for each antigen was generated by adding the numerical score of the percentage of positive staining to that of the staining intensity.
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8

Protein Expression Analysis Protocol

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Cells were lysed in 2% SDS containing 2 mM phenyl-methyl sulphonyl fluoride (PMSF) (Sigma), 10 μg/ml antipain, leupeptin and trypsin inhibitor, 10 mM sodium fluoride and 1 mM sodium orthovanadate (all from Sigma) and sonicated for 30 s. Proteins of whole-cell lysates were assessed using the Lowry method, and equal amounts were separated on SDS-PAGE. The proteins were transferred to a nitrocellulose membrane (Schleicher and Schuell, BioScience GmbH, Germany) by electroblotting. The balance of total protein levels was confirmed by staining the membranes with Ponceau S (Sigma). Immunoblotting was performed with the following antibodies: anti-β2-AR (H-20), anti-ERK2 (C-14, positive also for ERK1), anti-phospho-ERKs (E-4), anti-MEK 1/2 (9G3), anti-phospho MEK 1/2 (7E10), anti-GAPDH (6C5), Anti-β-actin (C4), and anti-Histone H3 (1G1) all from Santa Cruz Biotechnology (Santa Cruz, CA); anti-NRF2 (from Invitrogen #PA5-88084, Waltham, Massachusetts, USA). Peroxidase-conjugate anti-mouse or anti-rabbit IgG (Amersham-Pharmacia Biotech, UK, or Santa Cruz) were used for enhanced chemiluminescence (ECL) detection. Each western blot was performed in triplicate.
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9

Immunohistochemical Evaluation of Apoptosis and Oxidative Stress Markers

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Another group of deparaffinized and hydrated sections was processed by the heat-induced epitope retrieval (HIER) method using a microwave oven for immunohistochemistry analysis. Then, HIER exposed parts were immediately reacted with 0.3% H2O2 solution in methanol to block endogenous peroxidase activity. After cooling the prepared slide at room temperature, the serum was added for 20 min to block the non-specific antigen-antibody binding. Next, they were treated with anti-caspase 3, anti-BAX, anti-BCL-2, and anti-Nrf2 [all obtained from Invitrogen, CA, USA], and anti-NF-κB p65 (obtained from Santa Cruz Biotechnology, TX, USA), and kept overnight at 4°C. Post rinsing the unbound antibodies with phosphate-buffered saline, secondary antibodies were applied, followed by treatment of sections with a 3,3′-diaminobenzidine-tetrahydrochloride-H2O2 solution to induce color development. Mayer’s hematoxylin was used as a counterstain and then all sections were visualized by using light microscopy (Aladaileh et al., 2021a (link)). Staining intensity was assessed and presented as a percentage of positive expression in 1,000 cells per eight HPF for NF-ĸB p65, caspase 3, and Bax, while Nrf2 and BCL2 immunostaining was determined through the area of positive expression using ImageJ analysis software (NIH, USA).
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10

Retinal Protein Extraction and Analysis

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Retinas were lysed as previously described to obtain nuclear-enriched proteins and total cellular proteins [24] . The purity of enriched lysates was checked by immunoblotting using a nuclear marker (anti-Histone H3 1:3000; Bethyl Laboratories) or a cytosol marker (antipan-actin, 1:3000; Millipore). Equivalent amounts of protein extracts (20 g) were resolved using SDS-PAGE and immunoblottings were performed following standard procedures. The antibodies used for western blotting were: anti-II-spectrin (AA6, 1:2000; Enzo Life) [25] , anti-AIF (1: 1000; Calbiochem) [26] , anti-Caspase7 (1:1000; Cell Signaling), anti-eIF2 (1:1000; Cell Signaling), anti-NRF2 (1:2000; Invitrogen), anti-phosphorylated-IRE1 (1:2000; Novus Biologicals), anti-phosphorylated-PERK (1:1000; Cell Signaling), antiphosphorylated-eIF2 (1:1000; Cell Signaling). Antibodies specificity is shown in Fig. S2.
Each blot analyzed proteins derived from 4 retinas pooled together and 3 independent pools from 3 different litters were used as biological replicates, one representative blot is shown.
The entire blots are shown in Fig. S3.
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