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Azcl he cellulose

Manufactured by Megazyme
Sourced in Ireland

AZCL-HE-cellulose is a chromogenic substrate used for the detection and quantification of cellulase activity. It is prepared by covalently linking a blue dye to hydroxyethyl cellulose, forming an insoluble, blue-colored substrate. When cellulase enzymes hydrolyze the substrate, the release of the blue dye into the solution allows for a colorimetric measurement of cellulase activity.

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10 protocols using azcl he cellulose

1

Quantifying Cellulase Enzyme Activities

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To separately determine the activities of the secreted CBH1 and EG2, we used the cellulase specific substrates resorufin-labeled cellobiose and azurine-crosslinked hydroxyethylcellulose (AZCL-HE-cellulose; Megazyme International Ireland Ltd., Wicklow, IRL), respectively. First, we assayed the activity of CBH1 secreted into the supernatant by means of SDS-PAGE analysis with resorufin-labeled cellobiose using a MarkerGene Fluorescent Cellulase Assay Kit (Marker Gene Technologies, Inc., OR; [31 (link)]). Briefly, 0.25 mM substrate was added to 10-times diluted supernatant and the mixture was incubated for 30 min at room temperature. After the addition of stop buffer, fluorescence intensity was measured (excitation 535/25 nm and emission 590/20 nm) by using an Infinite F500 microplate reader (Tecan Group Ltd., Mannedorf, CHE).
Next, we assayed the activity of EG2 secreted into the supernatant by using the substrate AZCL-HE-cellulose. Diluted supernatants were added to 50 mM citric acid buffer (pH 5.0) containing 200 mg/l AZCL-HE-cellulose and the mixture was incubated for 30 min at 40°C. After the addition of 2% w/v Trizma base solution (Sigma-Aldrich, St. Louis, MO, USA) to stop the reaction, the absorbance of the filtrate at 590 nm was measured against a blank with a SpectraMax Plus 384 microplate reader (Molecular Devices LLC., CA).
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2

Endoglucanase Activity Measurement

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Example 8

0.2% AZCL-HE-cellulose (I-AZCEL, Megazyme, Bray, Ireland) was suspended in 20 mM Bis-Tris buffer with addition of 0.01% Triton X-100 by gentle stirring. 100 μl of the 0.2% AZCL-HE-cellulose suspension and 20 μl enzyme samples were mixed in a microtiter plate and placed on ice before reaction. The assay was initiated by transferring the microtiter plate to an EPPENDORF® thermomixer, which was set to a temperature of 50° C. The plate was incubated for 15-30 minutes on the thermomixer at 700 rpm. The reaction was stopped by transferring the plate back to the ice bath. Then the plate was centrifuged at 1000×g in an ice cold centrifuge for a few minutes and 100 μl supernatant was transferred to a microtiter plate. The absorbance at 595 nm (OD595) was read as a measure of endo-cellulase activity. All reactions were performed in triplicate and a buffer control without endo-cellulase was also performed.

As a result, O7MRA showed endoglucanase activity with OD595 at 0.6406.

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3

Endoglucanase Activity Assay

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Example 8

The concentrate is assayed for endoglucanase activity by a microtiter plate assay as described below. A solution of 0.2% AZCL-HE-Cellulose (Megazyme International Ireland, Ltd., Bray, Co. Wicklow, Ireland) is made in a 0.1 M sodium acetate pH 5.5 buffer with stirring. The solution is distributed under stirring to a microtiter plate (200 μl to each well). Then 20 μl of enzyme sample is added and incubated in an EPPENDORF® THERMOMIXER® (Eppendorf AG, Hamburg, Germany) for 20 minutes at 50° C. and 650 rpm. A denatured enzyme sample (100° C. boiling for 20 minutes) is used as blank. After incubation the colored solution is separated from the solid substrate by centrifugation at 3000 rpm for 5 minutes at 4° C. A 150 μl sample of supernatant is transferred to a microtiter plate; and the absorbance is measured at 595 nm using a SPECTRAMAX® M2 Multi-Mode Microplate Reader (Molecular Devices, Beijing, China).

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4

Screening Fungal Cellulase Activity

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Proteins from the three transformants, #28, #47, and #48, which showed expression of all four proteins, were selected for activity testing using the chromogenic cellulose substrate AZCL-HE-cellulose (Megazyme Inc., Chicago, IL, USA). Cellulase activity using this substrate was measured by the amount of soluble blue dye released due to the breakdown of the colored substrate. Briefly, AZCL-HE-cellulose was added to MA medium at a concentration of 200 mg/L. An agar plug containing the mycelial mat was placed on the center of the AZCL-HE-cellulose plate and incubated at 30°C in a lighted incubator and monitored for the growth of the fungus along with the release of the blue dye. Controls used in this analysis were the cel7a-deleted strain AST1116, the wild-type strain QM6a, and the cellulase hyperproducing strain Rut-C30.
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5

Endolytic Activity Assay of Cellulases

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Endolytic activity was determined using the insoluble substrate azurine-cross-linked cellulose (AZCL-HE-Cellulose) (Megazyme). The substrate load was 3 g/L, and the enzyme concentrations were 5 μM for the cellobiohydrolases and 0.1 μM for the endoglucanase. The samples were incubated in a 96-well plate in a Thermomixer C (Eppendorf) at 50 °C, 1100 rpm, for 2 h. Hereafter the plate was centrifuged, and 100 μl supernatant was transferred to a 96-well plate, and the absorbance was measured at 595 nm.
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6

Endoglucanase Activity Assay for O7R3M

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Example 13

0.2% AZCL-HE-cellulose (I-AZCEL, Megazyme, Bray, Ireland) was suspended in 20 mM Bis-Tris buffer with addition of 0.01% Triton X-100 by gentle stirring. 100 μl of the 0.2% AZCL-HE-cellulose suspension and 20 μl enzyme samples were mixed in a microtiter plate and placed on ice before reaction. The assay was initiated by transferring the microtiter plate to an EPPENDORF® thermomixer, which was set to a temperature of 50° C. The plate was incubated for 15-30 minutes on the EPPENDORF® thermomixer at 700 rpm. The reaction was stopped by transferring the plate back to the ice bath. Then the plate was centrifuged at 1000×g in an ice cold centrifuge for a few minutes and 100 μl supernatant was transferred to a microtiter plate. The absorbance at 595 nm (OD595) was read as a measure of endo-cellulase activity. All reactions were performed in triplicate and a buffer control without endo-cellulase was also performed.

As a result, O7R3M showed endoglucanase activity with OD595 at 0.6491.

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7

Cellulase Activity Determination Protocol

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Cellulase activity in the culture supernatants was determined using AZCL HE-Cellulose (Megazyme International, Bray, Ireland) in 25 mM sodium acetate buffer pH 4.5 according to the manufacturer’s instructions. To measure biomass (dry weight), the cultures were harvested by filtration, washed with an equal volume of 0.8% NaCl solution, dried at 80°C for 24 hours, and weighed. Samples from two biological replicates and two technical replicates were measured.
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8

Endoglucanase Activity Assay

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Example 8

The concentrate is assayed for endoglucanase activity by a microtiter plate assay as described below. A solution of 0.2% AZCL-HE-Cellulose (Megazyme International Ireland, Ltd., Bray, Co. Wicklow, Ireland) is made in a 0.1 M sodium acetate pH 5.5 buffer with stirring. The solution is distributed under stirring to a microtiter plate (200 μl to each well). Then 20 μl of enzyme sample is added and incubated in an EPPENDORF® THERMOMIXER® (Eppendorf AG, Hamburg, Germany) for 20 minutes at 50° C. and 650 rpm. A denatured enzyme sample (100° C. boiling for 20 minutes) is used as blank. After incubation the colored solution is separated from the solid substrate by centrifugation at 3000 rpm for 5 minutes at 4° C. A 150 μl sample of supernatant is transferred to a microtiter plate; and the absorbance is measured at 595 nm using a SPECTRAMAX® M2 Multi-Mode Microplate Reader (Molecular Devices, Beijing, China).

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9

Cellulase Activity Screening of Isolates

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The isolates were evaluated for cellulase enzyme activity in liquid medium as previously described (Nyyssönen et al., 2013 (link)). Briefly, log-growth stage cells were washed and inoculated in liquid R2A + 0.1% (w/v) AZCL-HE-Cellulose (Megazyme, Ireland) in the dark at 30°C for 5 days in experimental triplicate. OD590 was measured at day five to allow for natural release of cellulase enzymes via export or cell lysis. Cellulomonas pakistanensis XG116, obtained from our internal culture collection, was used as the positive control. Uninoculated medium and Pseudomonas fluorescens strain N2E3, obtained from our internal culture collection, were used as negative controls.
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10

Substrate-Specific Enzyme Activity Assay

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pNPX, 4-nitrophenyl-α-l-arabinofuranoside (pNPA) (Sigma, Copenhagen, DK) and 4-nitrophenyl-β-d-glucopyranoside (pNPG) (Sigma, Copenhagen, DK), azurine-cross-linked (AZCL) arabinoxylan, AZCL xylan oat, AZCL debrancharabinan, AZCL HE-cellulose, AZCL xyloglucan, and AZCL barley-glucan (Megazyme, Bray, IE) were used as substrates to test the enzyme-specific activity. When using the pNPX, pNPA, and pNPG as substrates, the reaction and unit calculation was performed as described above (“Enzyme activity analysis” section). The assay using the AZCL substrates was performed as described by Huang et al. (2015 (link)). The enzyme activity was indicated by the diameter of blue haloes measured as millimeters.
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