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5 protocols using pr 1e2

1

Comprehensive Biomarker Profiling in Extramammary Paget's Disease

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PD‐L1 expression was evaluated in the tumor (TC) and immune cells (IC) using SP142 antibody (Ventana). Any PD‐L1 expression was considered positive if either TC or IC exhibited staining. AR (clone 441, Leica Biosystems, Buffalo Grove, IL), ER (SP1 clone, Ventana, Tucson, AZ) and PR (1E2, Ventana, Tucson, AZ) were analyzed using a ≥10% threshold for nuclear positivity. HER2 (4B5 clone, Ventana) was considered positive if >10% cancer cells showed complete, circumferential (3+) expression or exhibited HER2 gene amplification (see below). Nine cases (five vulvar and four scrotal) of EMPD and four MPD were explored for the expression of the splice variant of AR (ARv7) using immunohistochemistry (EPR15656, Abcam). Three EMPD cases were tested for mismatch repair proteins: MLH1 (Clone M1, Ventana), MSH2 (Clone G219‐1129, Ventana), MSH6 (Clone 44, Cell Marque) and PMS2 (Clone EPR3947, Cell Marque). Topoisomerase 2α (Clone 3F6, Leica) expression was considered positive if cancer cells exhibited nuclear positivity in ≥10%.7
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2

Immunohistochemical Profiling of Metaplastic Breast Cancer

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ER (SP1, Ventana, Tucson, AZ, USA), PR (1E2, Ventana), and HER2 (4B5, Ventana) staining was performed using the Ventana iVIEW DAB detection kit with an autoimmunostainer (Ventana BenchMark). Specimens demonstrating HER2 (2 +) were further tested for HER2 through fluorescence in situ hybridization (FISH; PathVysion, Abbott, Abbott Park, IL, USA). Immunohistochemistry was performed to verify the presence of differentially expressed genes in the metaplastic components, the intrinsic gene sets of NST components, and the differentially expressed genes associated with lymph node metastasis. Primary antibodies against EPAS1 (SC13596; Santa Cruz Biotech, Dallas, TX, USA), SLC2A1 (SC377228), IL1RA (SC374084), CAV1 (EP353; Bio SB, Santa Barbara, CA, USA), FBN1 (HPA021057; Sigma-Aldrich, St. Louis, MO, USA), HAPLN1 (HPA019482), COL9A3 (HPA040125), PYCARD (HPA054496), PDGFRA (HPA004947), NCAM1 (MRQ-42, Ventana), and SOX10 (SP267, Cell Marque, Rocklin, CA, USA) were used.
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3

Comprehensive Histochemical and Immunohistochemical Staining

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Alcian blue (pH 2.5)/Periodic Acid-Schiff (AB/PAS) histochemical staining was performed using standard methods, to highlight intracellular mucin and to distinguish neutral (magenta) from acidic (blue) mucin by light microscopy.
The following primary antibodies were used for immunohistochemistry: CK7 (OV-TL-12/30, Dako, 1:1600), CK20 (KS20.8; Dako, 1:800), PAX8 (BC12; Cell Signaling, 1:50), CDX2 (CDX2-88; Biogenex, 1:100), ER (SP1; Ventana, pre-diluted), PR (1E2; Ventana, pre-diluted), MUC6 (CLH5; Novocastra, 1:100), CD10 (56C6; Vector, 1:50), WT1 (WT49; Leica, pre-diluted), ARID1A (HPA005456; Sigma, 1:400, 30'). All immunohistochemical stains were performed on the BOND RX platform (Leica), using the standard protocol, with BOND Epitope Retrieval Solution ER2 (Leica) for 30 minutes, incubation of primary antibody for 30 minutes at room temperature and BOND Polymer Refine Detection (Leica).
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4

Retrospective Study of Myoepithelial Sialadenoma

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The study was approved by the Institutional Review Board. A retrospective search of the Washington University in St. Louis Department of Pathology and Immunology archive was searched from 1993 to 2013 for cases of MSH. Ten cases were identified that were diagnosed as MSH (a term used by one of the authors, HMM) and showed characteristic histopathologic features. Clinical and radiologic features were gathered from the electronic medical record. Hematoxylin and eosin slides were reviewed, and formalin fixed paraffin embedded tissue blocks were retrieved for immunohistochemical studies (IHC). Pankeratin (AE1/AE3/PCK26, Ventana, Tucson AZ), keratin (34βE12, Ventana, Tucson AZ), cytokeratin 5/6 [(CK5/6), D5/16B4, Ventana, Tucson AZ], beta-catenin (14, Cell Marque, Rocklin CA), p63 (4A3, Ventana, Tucson AZ) estrogen receptor [(ER), SP1, Ventana, Tucson AZ], progesterone receptor [(PR), 1E2, Ventana, Tucson AZ], smooth muscle actin [(SMA), 1A4, Cell Marque, Rocklin CA], and CD34 (QBEnd/10, Ventana, Tucson AZ) (prediluted per standard protocol, single antibody stain procedure with adequate controls) were performed on eight cases at the Washington University AMP Core Laboratory. In addition, the pathology departmental archive was searched for all in-house breast core biopsies from 2014 to 2017 to aid in an approximate determination of the incidence of MSH.
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5

Synchronous DCIS and IBC Characterization

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Patients diagnosed with synchronous DCIS and adjacent IBC and treated at the Erasmus Medical Center -Cancer Institute in the period between 2010 and 2015 were included (n = 73). Patients with neoadjuvant treatment, previous breast irradiation or a history of breast cancer were excluded. The tumor cell percentage was estimated beforehand by a pathologist and only samples with an estimated tumor cell percentage ≥50% were included. DCIS grade was assessed primarily based on cytonuclear differentiation and IBC grade was assessed according to the modified Bloom Richardson score (Elston & Ellis 1991) (link). Immunohistochemistry (IHC) was performed on each IBC, using ER (ER SP1; Ventana Medical Systems, Inc.), PR (PR 1E2; Ventana Medical Systems, Inc.) and HER2 (HER2 4B5; Ventana Medical Systems, Inc.) antibodies. ER and PR status were scored positive when ≥10% of the tumor cells were positive, according to the Dutch Breast Cancer Guideline (NABON 2017). HER2 status was scored according to the international guidelines (Wolff et al. 2014) (link). For this study, coded leftover patient material was used in accordance with the Code of Conduct of the Federation of Medical Scientific Societies in The Netherlands (FEDERA 2011). Therefore, there was no need for an informed consent or study approval by an ethical committee. Figure 1 provides an overview of the workflow.
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