The largest database of trusted experimental protocols

7 protocols using rt pcr kit

1

Quantitative PCR Analysis of Antioxidant Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Real-time fluorescence quantitative PCR (RT‒PCR): RT‒PCR was performed according to the RT‒PCR kit of Yeasen Biotechnology Co., Ltd., Shanghai, China (No. 11884ES50). The instrument was a StepOnePlus. The specific steps of the test were as follows: pre-denaturation at 95°C for 5 min followed by 40 cycles of 95°C denaturation for 10 s and 60°C annealing/extension for 30 s. The reaction system is presented in Table 5 below. The primers were synthesized by Suzhou Jinweizhi Bioengineering Company. The gene sequence is presented in Table 3. The relative expression was calculated using the 2 – ΔΔCT method.

Primer sequences for fluorescence-based quantitative real-time PCR.

Table 3
GenesGenBank numberPrimer sequences (5′→3′)Amplicon size (bp)
β-actinNM_205518.2FATCTTTCTTGGGTATGGAGTC141
RTCAGCAATGCCAGGGTA
Nrf2XM_046921130.1FGGTGACACAGGAACAACA223
RAAGTCTTATCTCCACAGGTAG
HO-1NM_205344.2FCTGAAGGAAGCCACCAAG136
RCCAGAGCAGAGTAGATGAAG
SODNM_205064.2FGCTTGTGGTGTAATTGGAAT159
RAGACAGCAGAGTAGTAATGAG
GCLCXM_046915268.1FAGGCTATGTGTCCGATATTG100
RGTTGTTCTTCAGTGGCTCTA
GCLMNM_001007953.2FGCTGCTAACTCACAATGACC174
RTGCATGATATAGCCTTTGGAC
NQO1NM_001277620.2FCACCATCTCTGACCTCTAC173
RCCGCTTCAATCTTCTTCTG
+ Open protocol
+ Expand
2

Quantitative RT-PCR Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNAs were extracted using the TRIzol reagent (Beyotime Company, Beijing, China). cDNA was synthesized from RNA using an RT-PCR kit (Yeasen, China), and qRT-PCR was conducted using the SYBR qPCR Mix (Vazyme, Nanjing). The PCR was performed using an ABI 7900 fluorescence quantitative PCR instrument (ABI, USA). The expression of β-actin was applied to standardize mRNA expression and use the variation = 2- ΔΔ CT method calculation. The primers of NGFR and β-actin were as follows: β-actin: 5′-AGAGCTACGAGCTGCCTGAC-3′(F) and 5′- AGCACTGTGTTGGCGTACAG-3′ (R), NGFR: 5′-CAGGTGTGGATCTTTCGTAATCA-3′ (F) and 5′-GTCCGGGTGTGGTAAAACAGG-3′ (R), HO-1:5′-AAGACTGCGTTCCTGCTCAAC-3′ (F) and 5′-AAAGCCCTACAGCAACTGTCG-3′ (R), and FTH: 5′-CCCCCATTTGTGTGACTTCAT-3′ (F) and 5′-GCCCGAGGCTTAGCTTTCATT-3′ (R). Initiating with an initial denaturation stage lasting 10 min at 95 °C, the process progressed through 40 cycles of denaturation at 95 °C for 10 s, annealing at 52.8 °C or 56.2 °C for 15 s, and extension at 72 °C for 20 s. The temperature gradient ranged from 72 °C to 95 °C, increasing in increments of 1 °C per step; the gain calibration was set before the first run.
+ Open protocol
+ Expand
3

Quantification of miR-494-3p Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cellular or exosomal total RNA was extracted utilizing ISOLATION TRIzol buffer® (Multi Sciences, Hangzhou), followed by cDNA synthesis from the reverse-transcribed RNA using the RT-PCR Kit (Yeasen, China) following the manufacturer's instructions. Quantitative real-time PCR (qRT-PCR) was performed using the PerfectStart® Sybr qPCR Mix (Vazyme, Nanjing). Expression levels were determined using the 2−ΔΔCt method. The primers for miR-494-3p and U6 were as follows.
GeneForward seqReverse seq
U65′-AGGCTTGCTGCTCGGCAGTTGAT-3′5′-AAGCTAGCTGATCGATCGCTCT-3′
mi-494-3p5′-TGAAACATACACGGGAACCA-3′5′-ATGCTGCTAGCTGATCGCTAGCT-3′
+ Open protocol
+ Expand
4

Quantitative RT-PCR Analysis of ErbB4 Gene

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following the supplier's protocol, total RNA was recovered from cells by using ISOLATION TRIzol buf-fer® (Multi Sciences, Hangzhou), and cDNA was obtained from reverse-transcribed RNA with the RT-PCR Kit (Yeasen, China). The qRT-PCR was used PerfectS-tart® Sybr qPCR Mix (Vazyme, Nanjing). The expression levels were calculated by 2 -ΔΔCt assay. Primers of ErbB4 and β-actin were stated below: β-actin (human): 5'-CCATCGCCAGTTGCCGATCC-3' (F) and 5'-GC-GAGAGGAGCACAGATACCACCAA-3' (R); ErbB4 (human): 5'-GTCCAGCCCAGCGATTCTC-3' (F) and 5'-AGAGCCACTAACACGTAGCCT-3' (R); ErbB4 (mouse): 5'-CCTTCCTGCGGTCTATCCGA-3' (F) and 5'-CCAAAGTTGCCATCTTTCCTGTA-3' (R); β-actin (mouse): 5'-GTGACGTTGACATCCGTAAAGA-3' (F) and 5'-GCCGGACTCATCGTACTCC-3' (R).
+ Open protocol
+ Expand
5

Quantifying Gene Expression by RT-qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following the supplier's protocol, total RNA was recovered from cells using ISOLATION TRIzol buffer® (Multi Sciences), and cDNA was obtained from reverse‐transcribed RNA using an RT‐PCR kit (Yeasen). qPCR was performed using the PerfectStart® Sybr qPCR Mix (Vazyme). The expression levels of genes were calculated using the 2Ct method.26 The primer sequences for TNIP2 and‐actin were as follows: β‐actin:5′‐CCATCGCCAGTTGCCGATCC‐3′ (F) and 5′‐GCGAGAGGAGCACAGATACCACCAA‐3′ (R); TNIP2:5′‐AAGTCCTGACCAGTCGGAACA‐3′ (F) and 5′‐CCAGCAGGGACGAATACGTG‐3′ (R).
+ Open protocol
+ Expand
6

Quantitative RT-PCR for Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using Trizol (TaKaRa, Tokyo, Japan). 2 μg of RNA was reverse transcribed using an RT-PCR kit (Yeasen, Shanghai, China) according to the manufacturer’s protocol. qRT-PCR was performed using Hieff® qPCR SYBR Green Master Mix (Yeasen) on the CFX96 Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA), and the data were normalized to GAPDH expression. The primers used were listed in Supplementary Materials Table S1 (Sangon, Shanghai, China).
+ Open protocol
+ Expand
7

Anti-cancer Mechanism of Tan I in Vitro

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tan I (purity ≥98%) was purchased from Yuanye Bio-Technology (China) and its structure is shown in Figure 1A. The drug was dissolved in DMSO and stored at -20°C. RPMI 1640 medium was obtained from Cellmax (China) and the fetal bovine serum (FBS) was from Sijiqing (China). MTT assay kit and DAPI-staining kit were obtained from Beyotime Biotechnology (China) and Annexin V-FITC+PI double-staining kit was purchased from BD Biosciences (USA). RNA-Quick Purification Kit was purchased from Yishan Biotechnology (China) and both the mRNA reverse transcription kit and RT-PCR kit were obtained from Yeasen Biotechnology (China). BCA Protein Assay Kit was from Beyotime Biotechnology and the antibodies used in this study were purchased from Cell Signaling Technology (USA): cleaved caspase 3 (Cat 9664), cleaved caspase 9 (Cat 9505), cleaved PARP (Cat 5625), PUMA (Cat 12450P), Bcl-2 (Cat 3498), phospho-SAPK/JNK (Thr183/Tyr185) (Cat 4668), JNK (Cat 9252), phospho-p44/42 MAPK (ERK1/2) (Thr202/Tyr204) (Cat 4370), phospho-ATF-2 (Thr71) (Cat 5112), and β-actin (Cat 3700). Additionally, ERK1/2 (Cat AF0155) was from Affinity Biosciences (USA) and secondary antibodies were obtained from Santa Cruz Biotechnology (USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!