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2 protocols using chaps lysis buffer

1

Immunoprecipitation of Protein Complexes

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In all, 1 × 106 cells were grown in T25 cell culture flasks, when cells were 80% confluent, they were lysed using the CHAPS-lysis buffer (Cell Signalling #9852). Protein was collected by centrifuging the cell lysates at 12,000 x g. Protein homogenates were then incubated with primary antibody (1:200) overnight in cold room. Antibody-protein complexes were separated by Pure-Proteome magnetic A/G beads (Sigma LSKMAGAG02) using manufacturer’s protocol and run on an immunoblot to detect interacting partners.
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2

Immunoblotting Analysis of Apoptosis and UPR Signaling

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Cells were harvested after treatment, washed 3 times with PBS and lysed in CHAPS lysis buffer (Cell Signaling Technology). The concentration of protein was measured using the BCA protein assay kit, and loading buffer was added to the samples. The samples were subjected to 12% SDS-PAGE; then proteins were transferred onto PVDF membranes (Millipore). After blocking with 5% non-fat milk at room temperature for 1 h, PVDF membranes were incubated with primary antibodies overnight at 4°C. The following antibodies against these proteins were used: Caspase-3, PARP, Mcl-1, Bcl-xl, Bcl-2, Bax, Smac/DIABLO, Cytochrome C, ATF-4, phospho-IRE1α, IRE1α, phosphor-eIF2α, eIF2α, phosphor-Akt, Akt, phosphor-PI3K, PI3K, mTOR, and GAPDH, which were all purchased from Cell Signaling Technologies (Danvers, USA). Next, the membranes were incubated with the corresponding secondary antibodies for 1 h at room temperature.
Finally, the proteins were detected by enhanced chemiluminescence, and densitometric analysis was performed using ImageJ software. The cytosolic fraction of the cells was purified as described earlier [25] .
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