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A1r ti2 e

Manufactured by Nikon
Sourced in Japan

The A1R+ Ti2-E is a high-performance laser scanning confocal microscope system designed for advanced imaging applications. It features a resonant scanner and a traditional galvanometer-based scanner, providing fast image acquisition and high resolution. The system is equipped with a proprietary Nikon Ti2 inverted microscope platform, offering enhanced stability and versatility for a wide range of research and imaging needs.

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10 protocols using a1r ti2 e

1

Visualizing Phagocytosis of E. coli

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The cells in different groups were inoculated onto coverslips in a 12-well plate (3 × 105 cells/well) and incubated in the dark for 6 hours with 400 μL/well of FITC-labeled E coli (final concentration: 0.04 mg/mL). Each well was then supplemented with 200 μL of 4% trypan blue (Invitrogen) to quench the extracellular fluorescence of FITC-labeled E coli for 1 minute. Following this, the cells were fixed with 4% paraformaldehyde (Solarbio) for 30 minutes and washed 3 times with PBS prior to being stained with 400 μL/well of Tetramethylrhodamine isothiocyanate-labeled phalloidin (final concentration: 100 nM) (Yeasen, Shanghai, China.) at room temperature for 1 hour. Lastly, the cells were washed thrice with PBS and mounted for subsequent visualization and imaging under the confocal laser scanning microscope (A1R + Ti2-E, Nikon, Japan) in a 2-line laser launch (488 nm and 561 nm laser lines).
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2

Fluorescence Recovery After Photobleaching

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For FRAP assays, HeLa cells expressing VN-CBX7C and YC-PHC2 simultaneously or CBX7-EGFP-Flag individually were seeded onto coverslips inside of a culture dish. Images of cells were acquired using laser scanning confocal microscopy (LSCM [A1R + Ti2-E, Nikon]) in 100-fold magnification and further zoomed in for 5-folds. FRAP imaging was performed with excitation wavelength at 488 nm, and one image were taken before photobleaching. Immediately after photobleaching with 2% of 488 nm laser in the selected square area, images were taken with 1-min intervals (expressing VN-Cbx7C and YC-Phc2) or with 10-s intervals (expressing CBX7-EGFP-Flag). Meanwhile, NIS-Elements software was used to collect the fluorescence values of the bleached area in real time. The fluorescence intensities before photobleaching were normalized before calculating the fluorescence recovery.
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3

Quantifying Autophagic Vesicles and Mitophagy

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To measure autophagic vesicles, HaCaT cells were transfected with GFP-LC3 adenoviruses at a 20 multiplicity of infection (MOI). After cultured for 24 h, HaCaT cells were pretreated with LBP (or 4-PBA) for 2 h and then were treated with PM2.5 for 24 h. Furthermore, Mito tracker Red was incubated with HaCaT cells for 20 min to detect mitophagy. Then the fluorescent signals were detected by a confocal microscopy (Nikon, A1R+ Ti2-E).
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4

Bimolecular Fluorescence Complementation in N. benthamiana

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The full‐length coding sequences of AP1μ2, AP1σ1 and AP1σ2 were individually cloned in‐frame with the N‐terminal half of the YFP sequence in the vector pEarleygate201‐YN. The full‐length coding sequences of RPG1, RPG1Y166A/F169A and the four entire cytoplasmic loops of RPG1 (C1, C2, C3 and C4) were cloned in‐frame with the C‐terminal half of YFP in pEarleygate202‐YC. These constructs were introduced into Agrobacterium (Agrobacterium tumefaciens) strain GV3101 and coinfiltrated into young leaves of Nicotiana benthamiana plants grown for c. 3 wk. YFP fluorescence was examined by confocal laser scanning microscopy (Nikon A1R+ Ti2‐E) after 48 h. Arabidopsis CLATHRIN HEAVY CHAIN2 (CHC2)‐YN and CLATHRIN LIGHT CHAIN2 (CLC2)‐YC were used as a positive control. Constructs expressing YFP‐N (YN) and YFP‐C (YC) were used as a negative control.
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5

Mitochondrial Dynamics in Melittin-Treated A549 Cells

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A549 were cultured in a 6-well plate overnight, followed by transfection with GFP-LC3 adenovirus (40 MOI) for 24 h. Subsequently, cells were dealt with or without Baf A1 for 2 h and melittin (0, 2, 4 μg/ml) for another 24 h. Afterward, intracellular mitochondria were labeled with Mitotracker Red. The fluorescent signals of intracellular mitochondria were detected by confocal microscopy (Nikon, A1R + Ti2-E).
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6

Generating Transgenic SMXL Overexpressing Plants

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To generate the 35S::SMXL6,7,8-GFP (OE-SMXL6,7,8) construct, the full-length coding sequences of SMXL6,7,8 were individually cloned into the KpnI-SalI sites of the pCAMBIA1300-GFP vector via the in-fusion method (Clontech). The primers are shown in Table S1. To generate OE-SMXL6, OE-SMXL7, and OE-SMXL8 transgenic plants, the corresponding constructs were introduced into the Agrobacterium strain GV3101 and then into the wild type via the floral dip method [39 (link)]. Homozygous OE-SMXL6-4, OE-SMXL7-1, and OE-SMXL8-2 were introduced into dwa1-1 to obtain OE-SMXL6/dwa1-1, OE-SMXL7/dwa1-1, and OE-SMXL8/dwa1-1 lines via genetic crossing, respectively.
For the fluorescence observation of the OE-SMXL6/7/8 and OE-SMXL6/7/8/dwa1 transgenic lines, these seeds were sown in the same ½ MS medium plate and subjected to a 16-hour-light/8-hour-dark photoperiod and 60% relative humidity at 22 °C in a greenhouse. Fluorescence observation was performed after 5 days. The seedlings of two transgenic lines, such as OE-SMXL6 and OE-SMXL6/dwa1, were placed under the same slide for observing using the layer scanning method with a confocal laser scanning microscope (Nikon, A1R + Ti2-E, Tokyo, Japan). Then, multiple-layer fluorescent images were superimposed into a single image using a stacking technique in Photoshop. Finally, the overall fluorescence in the multiple roots of the two lines were counted.
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7

Bimolecular Fluorescence Complementation

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The coding regions of SMXL6,7,8 and DWA1 were cloned next to the N-terminal part of YFP (nYFP) in the pEarleygate202-YN vector and the C-terminal part of YFP (cYFP) in the pEarleygate201-YC vector. Different constructs (including empty vectors) were transformed into the Agrobacterium strain GV3101 and then infiltrated into Nicotiana benthamiana leaves for transient expression. Fluorescence was observed and photographed in leaf epidermal cells 2 days after infiltration using a Confocal laser scanning microscope (Nikon, A1R+Ti2-E, Tokyo, Japan).
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8

Immunofluorescent Staining of AQP5

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The cryosections were washed with PBS and then blocked with 5% horse serum in PBS for 1 h and incubated overnight at 4 °C in a solution of the following primary antibody: rabbit anti-AQP5 antibody (1:200, Merck Millipore, Billerica, MA, USA). It was then washed with PBS and reacted with a secondary antibody, Alexa Flour 488 Donkey anti-rabbit IgG (1:800, Invitrogen), for 60 min at room temperature. It was re-washed with PBS followed by nuclear staining with DAPI (1:10,000, Invitrogen) for 3 min at room temperature; then, it was washed with PBS and encapsulated using a VECTASHIELD Vibrance Antifade Mounting Medium (Vector Laboratories). After drying, the stained sections were photographed cross-sectionally using a confocal laser microscope A1R/Ti-2E (Nikon, Tokyo, Japan).
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9

Immunofluorescence Imaging of HaCaT Cells

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In brief, HaCaT cells were treated with LBP and PM2.5, and then washed three times with PBS and fixed with 4% paraformaldehyde at 25°C for 15 min. After cell fixation, incubated with primary antibody overnight at 4°C, and then washed three times with PBST and incubated with fluorescent secondary antibody for 1 h. After that, with DAPI counterstained-cell nucleus, the samples were observed by a confocal microscope (Nikon, A1R+ Ti2-E).
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10

Apoptosis Detection in HaCaT Cells

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HaCaT cells (1 × 105 cells/well) were seeded in 6-well plates for 24 h. Then cells were pretreated with or without LBP (or 3-MA) for 2 h, and subsequently treated with or without PM2.5 (100 μg/ml) for another 24 h. Apoptosis was detected by a confocal microscope (Nikon, A1R+ Ti2-E), using an Annexin V- FITC/PI Apoptosis Kit.
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