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3 protocols using anti calbindin

1

Antibody Profiling for Neurodevelopmental Markers

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The following primary antibodies were used: anti-BIG1 N-terminal (Santa Cruz, sc-376790), anti-BIG1 C-terminal (Bethyl, A300-998A), anti-Lamin-B (Santa Cruz, sc-6216) anti-Pax6 (Covance, PRB-278P), anti-cleaved-Caspase-3 (Cell Signaling, #9661), anti-Calbindin (Santa Cruz, sc-7691), anti-Prox1 (R&D Systems, AF2727), anti-Ctip2 (Abcam, ab18465, gift from Dr. Makoto Sato, Osaka University), anti-Tbr1 (Chemicon, AB9616; Santa Cruz, sc-15607), anti-Cux1 (Santa Cruz, sc-13024), anti-BrdU (BD Pharmingen, 555627), anti-Map1b (clone 1B6, gift from Dr. Reiko Harada, Takarazuka University of Medical and Health Care) [20 (link)], anti-Tau1 (Chemicon, LV1383492), anti-Map2 (Cell Signaling, #4542), anti-Tuj1 (Covance, MMS-435P) and anti-Golgin97 (Gift from Dr. Nobuhiro Nakamura, Kyoto Sangyo University) [21 (link)]. The following secondary antibodies were used: HRP-conjugated goat anti-mouse (ICN Pharmaceuticals, 59296), calf anti-rabbit (Rockland, 200–4135) or calf anti-goat (Rockland, 200–1135), Alexa-Fluor-488-labeled or Alexa-Fluor-594-labeled donkey anti-mouse (Invitrogen, A21202; Molecular Probes, A21203), donkey anti-rabbit (Invitrogen, A21206; Molecular Probes, A21207), donkey anti-rat (Molecular Probes, A21208) and donkey anti-goat (Molecular Probes, A11055).
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2

Immunohistochemical Analysis of Retinal Tissues

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The immunohistochemical methods have been described previously.28 (link),31 (link),32 (link) Eyecups were fixed with 4% paraformaldehyde, cryoprotected, and embedded in tissue freezing medium (Electron Microscopy Sciences, Hatfield, PA, USA), and 10- to 15-µm-thick frozen sections were cut. The tissues were incubated with diluted primary antibodies overnight (sections) or for 48 hours (whole mounts), washed, and then incubated in secondary antibodies for 2 to 4 hours. Images of immunolabeled retinal sections or whole mounts from control and experimental groups were obtained with an Olympus FV1200 MPE confocal microscope (Olympus, Tokyo, Japan) using a 40× oil-immersion objective. High-resolution (1024 × 1024 pixels) z-stack images were taken using step sizes of 0.7 to 2.0 µm and compiled. The brightness and contrast of micrographs were adjusted using Photoshop CS6 (Adobe, San Jose, CA, USA). The primary antibodies were anti-PKCα (1:10,000; Sigma-Aldrich); anti-Chx10 (1:500; Santa Cruz Biotechnology, Dallas, TX, USA); anti-calbindin (1:500; Santa Cruz Biotechnology); anti-SMI32 (1:2000; Covance, Princeton, NJ, USA); anti-VGlut1 (1:150; BioLegend, San Diego, CA, USA); and anti-CtBP2 (1:500, Santa Cruz Biotechnology). Secondary antibodies were conjugated with Alexa Fluor 488, 594, and 633 (1:200; Thermo Fisher Scientific, Waltham, MA, USA).
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3

Immunolabeling of Neuronal Markers

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Cryostat sections (10–20 µm) were collected on Superfrost Plus slides, permeabilized with 0.1% Triton X-100 in PBS containing 1% gelatin, and stained with the following antibodies: mouse monoclonal against MAP2 (Chemicon International, Temecula, CA, USA), rabbit polyclonal against MAP2 (Sigma, St. Louis, MO, USA), β-galactosidase ( Promega Madison, WI, USA), anti-neuropilin 1 (NP1; Abcam, Cambridge, MA, USA) and anti-neuropilin 2 (NP2; Sigma, St. Louis, MO, USA), neurofilament 200 (Biorad, Hercules, CA, USA), or anti-calbindin (Santa Cruz, Santa Cruz, CA, USA, ) antibodies. Sections were incubated with one or more of the secondary antibodies (Alexa Fluor 546-coupled anti-rabbit IgG and Alexa Fluor 488-coupled anti-mouse IgG; 1/2000, Molecular Probes, Eugene, OR, USA). Some sections were incubated with a 0.1 µg/mL solution of DAPI (4,6-diamidino-2-phenylindoldihydrochloride, Sigma) to label cell nuclei. Sections were viewed using an epifluorescent Zeiss microscope as previously described [19 (link)].
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