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P nitrophenyl β d glucopyranoside

Manufactured by Merck Group
Sourced in United States, Germany

P-nitrophenyl-β-D-glucopyranoside is a chemical compound used as a substrate in enzymatic assays. It is a derivative of the monosaccharide glucose and contains a nitrophenyl group. The compound is used to monitor the activity of glucosidase enzymes, which catalyze the hydrolysis of the glycosidic bond.

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57 protocols using p nitrophenyl β d glucopyranoside

1

Characterization of Polysaccharide Substrates

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p-Nitrophenyl b-D-glucopyranoside, p-nitrophenyl α-glucopyranoside, locust bean gum, and beech wood xylan were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). Carboxymethylcellulose (CMC), microcrystalline cellulose (MCC) were purchased from Merck (Germany). All other reagents used were of the highest grade available.
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2

Enzymatic Assays for Carbohydrate-Active Compounds

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All reagents and standards were of analytical reagent (AR) grade unless stated otherwise. Methanol (99.9%) was obtained from Fluka (Lisbon, Portugal). Sodium carbonate (100%), a-glucosidase from Saccharomyces cerevisiae (type I), intestinal acetone powder from rat source of a-glucosidase, b-glucosidase from almonds, a-amylase from porcine pancreas (type VI-B), lipase (type II; from porcine pancreas), p-nitrophenyl-a-D-glucopyranoside (a-pNPG), p-nitrophenyl-b-D-glucopyranoside (b-pNPG), p-nitrophenyl butyrate (pNPB), bovine serum albumin (BSA, ! 98%), D-(-)-ribose (!99%), aminoguanidine hydrochloride (AMG, ! 98%), conduritol B epoxide (!95%), acarbose, orlistat and formic acid (98%) were purchased from Sigma-Aldrich (St. Louis, MO, USA). 5-O-cafeoylquinic acid (>95%), 1,5-; 1,3-; 3,4-; 4,5-di-O-caffeoylquinic acids (>98%), 3,4,5-O-tricaffeoylquinic acid (>98%) and 1-deoxynojirimycin (95e99%; 1-DNJ) were purchased from Biopurify Phytochemicals LTD (Chengdu, China). Ethylenediaminetetraacetic acid (EDTA, >99%) and sodium azide (>99%) were obtained from Merck (Darmstadt, Germany). LCeMS grade acetonitrile (CH 3 CN, 99%) (LabScan; Dublin, Ireland) and ultrapure (UP) water (Milli-Q Waters purification system; Millipore; Milford, MA, USA) were used for the HPLC-MS analyses.
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3

Quantifying Beta-Glucosidase Inhibition in Plant Extracts

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β-glucosidase inhibitory activity of plant extracts was carried out according to a previous study [28 (link)] and adapted in a 96-well plate. Briefly, 20 µL of substrate (p-nitrophenyl-β-D-glucopyranoside, Sigma Chemical Co., 1 mg/mL), 10 µL of varying concentrations of samples (1, 2, 3, 4, 5 and 10 mg/mL) and 20 µL of pH 5 sodium phosphate buffer were mixed in 96-well plate and incubated at 37 °C for 10 min; 10 µL of enzyme solution (β-glucosidase Sigma Chemical Co., 5 mg/mL) were added and the mixture was incubated for another 30 min at 37 °C. 140 µL of pH 10 buffer 50 mM was added to stopped the reaction. Positive control contained, a mixture of solvents instead of the extract; while in the negative control, pH 10 buffer was added at the beginning of the test in order to block enzyme activity. Absorbance was read at 410 nm and the activity was calculated using the following formula: % enzymatic inhibition =100[Abs testAbs negative controlAbs positive control×100]
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4

Enzymatic Assay for α-Glucosidase Activity

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α-Glucosidase (Saccharomyces cerevisiae, EC3.2.1.20, 20 U/mg) and the substrate, p-nitrophenyl-β-d-glucopyranoside (p-NPG) were purchased from Sigma-Aldrich, and the assay was performed exactly according to our previous report34 (link),35 (link).
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5

Colorimetric β-glucosidase Activity Assay

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The β-glucosidase activity was measured by determining the hydrolysis of p-nitrophenyl-β-D-glucopyranoside (pNPG; Sigma) using the initial rate of accumulation of coloured reaction product as described by9 (link). One hundred eighty microliter of 5 mM pNPG substrate was diluted in 50 mM Tris HCl buffer (pH 8.5) and mixed with a 20 μl aliquot of the acquired enzyme. Then, the mixture was incubated at 50 °C for 10 min, and the reaction was terminated by adding 100 μl of ice-cold 0.5 M Na2CO3. The release of p-nitrophenol (pNP) via enzymatic hydrolysis was indicated by the appearance of a yellow colour and the absorbance was measured with a UV/Vis microplate spectrophotometer (Multiskan GO, Thermo Scientific) at 405 nm. One unit (U) of β-glucosidase activity was defined as the amount of enzyme that released 1 μmol of pNP per minute from the substrate. All experiments were performed in three technical replicates. Statistical significance between treatments and a control group was assessed using post-hoc Tukey's Honestly Significant Difference (HSD) test. Differences were considered statistically significant at a p-value of < 0.05.
Relative activity is as follows: RelativeActivity(%)=(Activityofsample(U)/Maximumenzymeactivity(U))100
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6

Recombinant β-glucosidase expression in E. coli

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The recombinant pGEX-4T-1 vector containing S. griseus β-glucosidase gene (GST-tagged) in E. coli BL21 (DE3) was developed in a previous study [14 (link)]. Ampicillin, glycerol, Isopropyl-β-D-thiogalactopyranoside (IPTG), LB broth, p-nitrophenyl-β-D-glucopyranoside (pNPG), p-nitrophenol (pNP), cellobiose, fructose sucrose, tryptone, yeast extract, beef extract, CaCl2, DTT, KOH, MgCl2, (NH4)2S4, ZnSO4, Triton X-100, M PMSF, Lysozyme, Bradford reagent, and Glutathione Sepharose 4B resin were purchased from Sigma Aldrich (Ireland).
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7

Characterization of Mannose-based Polysaccharides

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Mannobiose (M2), mannotriose (M3) and mannotetraose (M4) standards were purchased from Megazyme (Bray, Ireland). Locust bean gum (LBG), solka floc, glucose, mannose, guar gum, p-nitrophenyl-α-d-galactopyranoside, p-nitrophenyl-β-d-glucopyranoside, p-nitrophenyl-β-d-mannopyranoside, p-nitrophenol (pNP) and other chemicals were sourced from Sigma-Aldrich, USA. Copra meal was obtained from Parker Biotech Private Ltd., Tamil Nadu, Chennai, India. Food-grade konjac gum (glucomannan) was obtained from New Foods, Bloomingdale, Illinois, USA. Fenugreek seed (Trigonella foenum-graecum) meal, Aloevera pulp, rice husk, wheat straw and wheat bran were purchased from local markets.
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8

Detecting Clostridium difficile Toxins

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Toxins A and B in the culture supernatants of the isolates were detected using the Cdifftox activity assay for toxin activity (Darkoh et al., 2011b (link)) and C. difficile TOX A/B II ELISA test (TechLab, Blacksburg, VA, USA) for toxin production. For the Cdifftox activity assay, the culture was centrifuged for 10 min at 10 000 xg and the supernatant (250 μl) was added to 30 μl of 0.2-μ filtered 30 mM p-nitrophenyl-β-D-glucopyranoside (Sigma-Aldrich, St. Louis, MO, USA) in a sterile 96-well plate. The sample was incubated aerobically at 37 C for 4–24 h and absorbance at 410 nm was measured using a SpectraMax I3 spectrophotometer (Molecular Devices, Sunnyvale, CA, USA).
For the ELISA test, 200 μl of the supernatant was used and the manufacturer’s instructions were followed.
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9

Colorimetric Assay for β-Glucosidase Activity

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p-nitrophenyl-β-D-glucopyranoside (PNPG), pure sodium taurocholate (6 mg/ml), Triton X-100, glucose, and D-gluconolactone (D-glucono-1,5-lactone), were obtained from Sigma-Aldrich (Germany). Additionally, we used pure sodium acetate buffer (50 mM; 0.4355% w/v CH3COO Na/, 0.1089% w/v CH3COOH, pH 5), and lysis buffer (155 mmol/L NH4Cl; 10 mmol/L NaHCO3; 0.1 mmol/L EDTA) obtained from Semikem (Bosnia and Herzegovina). Blood samples were acquired using the guidelines and approval of the University of Burch Research Ethics Committee (30052016). Written informed consent was obtained from two healthy adult male donors. Whole EDTA blood (10 ml) was collected aseptically.
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10

Quantitative Analysis of Licorice Bioactive Compounds

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Monacolin K, citrinin, liquiritin, liquiritigenin, trifluoroacetic acid, acetic acid, and p-nitrophenyl-β-D-glucopyranoside were purchased from Sigma-Aldrich Co. (USA), isoliquiritin and isoliquiritigenin from ChemFaces (China), and liquiritin apioside and isoliquiritin apioside from Chengdu Biopurify Phytochemicals Ltd. (China). All HPLC-grade solvents were purchased from Fisher Scientific Korea Ltd. (Korea). Extraction solution and methanol were purchased from Samchun Pure Chemical (Korea). Potato dextrose agar (PDA) was purchased from Acumedia Inc.(USA), and glucose from Duksan Pure Chemicals (Korea). Yeast extract-peptone-dextrose and yeast nitrogen base media were purchased from Sigma-Aldrich Co. G. uralensis base media were composed of 2.0 5.0% G. uralensis extracts and 2% glucose. Licorice (G. uralensis) was purchased from a regional market in Chungcheongbuk-do, Korea. Licorice extracts were prepared by adding 5 L of distilled water to 1.2 kg of licorice, followed by boiling at 95oC for 5 h. The extraction supernatant recovered by filtration with a Whatman filter paper No. 1 (UK) was concentrated to a solid content of 15% using a vacuum evaporator.
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