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Dimethyl sulfoxide (dmso)

Manufactured by Bioworld Technology
Sourced in Ireland, United States

DMSO (Dimethyl Sulfoxide) is a clear, colorless liquid commonly used as a solvent in various laboratory applications. It has a high boiling point and is miscible with water and many organic solvents. DMSO is primarily utilized as a solvent for a wide range of chemical compounds, facilitating their dissolution and subsequent analysis or experimentation.

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3 protocols using dimethyl sulfoxide (dmso)

1

Synthesis and Formulation of GSK2702926A

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GSK2702926A was synthesized at GlaxoSmithKline as previously described by Rivero et al (2014). For intraperitoneal (i.p.) dosing, a dose of 5 mg/kg (0.01 g/ml in 10% dimethyl sulfoxide (DMSO) (BioWorld, Dublin, OH, USA)) was formulated fresh daily from frozen stock in DMSO. Vehicle control was 10% DMSO. For oral dosing, GSK6A was formulated at a dose of 5 mg/kg in Jif® peanut butter. Mouse weights were averaged, and peanut butter pellets were formulated and frozen for an average mouse weight of 23 grams. The average of weight for the mice used in this study was 22.28 grams with an SEM of 0.5988. Mice were observed to ensure ingestion of the pellet, which typically occurred within 5 minutes. 10 μM GSK6A stock in DMSO was formulated to a concentration of 1 μM prior to use. BYL719 (Alpelisib) (VWR International, Radnor, PA, USA) was formulated to a 5 mM stock in DMSO and diluted to 0.05 μM. 2 mM IC87 (IC87114, Millipore Sigma, Darmstadt, Germany) stock was likewise prepared in DMSO and diluted to 2 μM for use.
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2

PCR-based Genomic DNA Sequencing

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Specific primers were provided by PHUSA Biochem Company (Can Tho, Vietnam; Appendix 1). Polymerase chain reaction (PCR) was performed using a total reaction volume of 20 µl that included 10 ng genomic DNA, 1X NEB master mix (New England Biolabs, Ipswich, MA), 10 pmol of each primer, 1 µl DMSO (Bioworld, Dublin, Ohio (OH; 43017), and 16.5 µl deionized water. The thermal cycle comprised denaturation at 95°C for 5 min, followed by 40 cycles of 95°C for 15 s, 58°C for 30 s, 68°C for 20 s, and a final extension at 68°C for 5 min. The PCR products were then purified using a MultiScreen-PCR 96 Filter Plate (Merck-Millipore, Burlington, MA) and subsequently bi-direction sequenced using an ABI Prism BigDye Terminator Cycle Sequencing Kit Version 3.1 (Applied BioSystem, Waltham, MA) on an ABI genetic analyzer 3500 (Applied Biosystems, Waltham, MA).
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3

Comprehensive Genetic Analysis of CYP2D6 Gene

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Sanger sequencing method was used to identify nucleotide variants in the promoter, entire 9 coding exons and their flanking regions of CYP2D6 gene. Primers provided by PHUSA Biochem Company (Can Tho, Vietnam) were listed in Supplementary Table 1. Polymerase chain reaction (PCR) reaction was performed with a total volume of 20 μL containing: 10 ng total genomic DNA, 1× DreamTaq Master mix (Thermo Fisher Scientific, Waltham, Massachusetts), 10 pmole each primer, 1 μL DMSO (Bioworld, Dublin, Ohio), and 16.5 μL deionized water. The thermo cycle was as following: denaturation at 95 °C for 5 minutes, following by 40 cycles of 95 °C for 15 seconds, 58 °C for 30 seconds, 72 °C for 40 seconds to 2 minutes, and a final extension at 72 °C for 5 minutes. For exon 5 to exon 8, the thermo cycle was as following: denaturation at 95 °C for 2 minutes, following by 35 cycles of 95 °C for 30 seconds, 59 °C for 30 seconds, 72 °C for 2 minutes, and a final extension at 72 °C for 5 minutes. PCR products were purified using Multiscreen PCR 96 Filter Plate (Merck-Millipore, Burlington, Massachusetts) and were then sequenced using ABI Prism BigDye Terminator Cycle Sequencing Kit Version 3.1 (Applied Biosystems), on an ABI genetic analyzer 3500 (Applied Biosystems).
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