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29 protocols using endofit ovalbumin

1

SARS-CoV-2 Spike Protein Vaccine Evaluation

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EndoFit Ovalbumin, CFA, AddaVax, and poly(I:C) were purchased from InvivoGen. The SARS-CoV-2 spike protein was purchased from RayBiotech. Alexa FluorTM 647 conjugated OVA and CellTrace Violet were purchased from Thermo Fisher. B16-F10 tumor neoantigen peptides were synthesized by GenScript (Piscataway, NJ). The sequences are as follows: M27: REGVELCPGNKYEMRRHGTTHSLVIHD; M30: PSKPSFQEFVDWENVSPELNSTDQPFL; M48: SHCHWNDLAVIPAGVVHNWDFEPRKVS.
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2

Generating and Analyzing Murine Dendritic Cells and Macrophages

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To generate murine BMDC or BMDM, bone marrow was flushed from femurs and tibias of C57BL/6J (B6) mice and cultured in Petri dishes at 5 × 106 cells per dish using complete RPMI-1640, supplemented as described above and containing 10 ng/mL GM-CSF (MilliporeSigma) or M-CSF (culture medium supplemented with 20% L929 supernatant), respectively. GM-CSF or M-CSF were replaced on day 4. After 1 week, cells were harvested and BMDC were further purified using magnetic anti-CD11c microbeads (Miltenyi Biotec). Purified CD11c+ murine DC or BMDM were seeded into 6-well plates and matured with 200 ng/mL human IL-32 (R&D Systems) for 48 hours. DC were pulsed with 1 mg/mL OVA (EndoFit Ovalbumin, InvivoGen) or 1 nM SIINFEKL (MilliporeSigma) antigen for 24 hours. Subsequently, CD8+ T cells were purified from the spleens of OT-I mice using EasySep Mouse CD8+ T cell Isolation Kit (negative selection, STEMCELL Technologies) and cocultured with matured CD11c+ DC. T cell proliferation was assessed after 48 hours using the BrdU Cell Proliferation Assay Kit (BioVision). Purified IL-32γ matured CD11c+ DC and BMDM as well as untreated controls were also transcriptionally profiled after 24 hours using NanoString and analyzed via flow cytometry after 48 hours.
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3

Intratracheal Allergen Challenge Model

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Mice were anesthetized with volatile isoflurane and held on an intubation stand by hooking its upper incisors on it. Materials were dissolved in 40 μl of sterile PBS and administrated intratracheally into mice through a catheter inserted into the trachea. Reagents used were: IL-33 (100 or 150 ng) (PeproTech), IL-7 (100 ng) (PeproTech), TSLP (150 ng) (R&D Systems), EndoFit Ovalbumin (100 μg) (InvivoGen), papain (25 μg) (Merck Millipore), and house dust mite extracts (Dermatophagoides farina) (25 μg) (Greer Laboratories). To inactivated papain, papain was heated at 100 °C for 10 min. In some experiments, 500 μg of anti-CD4 (GK1.5, BioXCell) or 500 μg of anti-MHCII (Y-3P, BioXCell) antibody were injected into mice through retro-orbital injection.
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4

Intratracheal Allergen Challenge Model

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Mice were anesthetized with volatile isoflurane and held on an intubation stand by hooking its upper incisors on it. Materials were dissolved in 40 μl of sterile PBS and administrated intratracheally into mice through a catheter inserted into the trachea. Reagents used were: IL-33 (100 or 150 ng) (PeproTech), IL-7 (100 ng) (PeproTech), TSLP (150 ng) (R&D Systems), EndoFit Ovalbumin (100 μg) (InvivoGen), papain (25 μg) (Merck Millipore), and house dust mite extracts (Dermatophagoides farina) (25 μg) (Greer Laboratories). To inactivated papain, papain was heated at 100 °C for 10 min. In some experiments, 500 μg of anti-CD4 (GK1.5, BioXCell) or 500 μg of anti-MHCII (Y-3P, BioXCell) antibody were injected into mice through retro-orbital injection.
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5

Intradermal Vaccine Delivery with NIR Laser

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Mice were shaved and depilated as described above. Four hours prior to the intradermal vaccination and laser treatment, mice were painted on the 4 spots of flank back skin (approximately 5 mm in diameter per spot) with 10 µl of a 1% FITC solution (Isomer I, Sigma) prepared in acetone:dibutyl phthalate (1:1, vol/vol; Sigma) as previously described (30 (link)). NIR laser treatment followed by vaccination with OVA (EndoFit™ Ovalbumin, Invivogen) at each treatment site (10 µg in 10 µl saline per spot, 4 spots in total) was performed on the FITC-painted sites. We then harvested skin-dLN 24 and 48 h after the vaccination and laser treatment, isolated DCs from LN, and analyzed using the same strategy as described above on the basis of surface markers of DCs and FITC fluorescence by flow cytometry.
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6

Indirect ELISA for Detecting OVA-specific IgG in Mouse Sera

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We detected OVA-specific IgG in sera by an indirect ELISA. Briefly, we coated microtiter plate wells (Nunc) with 100 µL OVA solution (2 μg/well; EndoFit Ovalbumin, Invivogen, San Diego, CA, USA) in 0.2 M carbonate buffer for 24 h at 4 °C. We washed the wells three times with PBS containing 0.05% (v/v) Tween 20 (PBST) and then blocked with 5% FCS/PBS (AAJ63160AK; Thermo, San Diego, CA, USA) at 37 °C for two hours. After three washings of PBST, 100 μL of a series of diluted sera samples (initial dilution 1:50) and 0.5% FCS/PBS as a control were added to the wells in triplicate. Then, we incubated the plates for 2 h at 37 °C and washed three times with PBST. We diluted from 100 μL aliquot of rabbit anti-mouse IgG horseradish peroxidase conjugate (AP160P; Sigma) with 1:10,000. Then, we incubated the plates for 2 h at 37 °C. After washing with PBST, we determined the peroxidase activity by adding 100 µL of substrate solution (10 mg of O-phenylenediamine and 37.5 µL of 30% H2O2 in 25 mL of 0.1 M citrate–phosphate buffer, pH 5.0) to each well. After incubation for 10 min at 37 °C, we added 50 µL/well of 2 N H2SO4 (Merck, NJ, USA) to each well to terminate the enzyme reaction. We used an ELISA reader (TECAN SunriseTM, Männedorf, Switzerland) at 450 nm to perform the assays on each of the sera samples after conducting within- and between-group comparisons.
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7

RBC-based Antigen Delivery for Potent T Cell Priming

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Mouse AAC-Ova was generated as stated above by squeezing RBCs with EndoFit Ovalbumin (InVivoGen) and poly I:C (InVivoGen), while AAC-E7 was generated by squeezing mouse RBCs with mouse-E7 SLP (Biosyntan GmbH) and poly I:C (Dalton Pharma Services). Either were injected RO at 250x106 per C57BL/6J recipient (unless otherwise indicated) on day 0. In cases of multiple immunizations, see Figure S2E and S2F for a timeline. Seven days post last immunization, spleens (or blood in the case of splenectomized mouse studies) were harvested, processed into single cells, and co-cultured with appropriate stimulation, anti-CD28 (8 µg/mL, eBioscience, San Diego, CA, USA) and either Ova257-264 (1 µg/mL, SIINFEKL, AnaSpec, Freemont, CA, USA) or E749-57 (4 µg/mL, AnaSpec) with sequences found in Supplementary Table S1, for one hour and for an additional four hours in the presence of GolgiStop/GolgiPlug (BD Bioscience, Franklin Lakes, NJ, USA). Following restimulation, cells were stained for flow cytometry analysis using BD Bioscience FACS lysis solution and Fixation/Permeabilization kit according to manufacturer’s instructions and with the panel in Supplementary Table S6. For tetramer staining, the panel in Supplementary Table S7 was used.
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8

Endotoxin-free Immunogen Preparation

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Vaccines were prepared in sterile, endotoxin-free (<0.05 EU/mL) PBS (Gibco, Life Technologies) and administered subcutaneously in a total volume of 50 μL. All immunogens were certified endotoxin free (<1 EU/mg) by the manufacturer or were prepared in-house with <5 EU/mg as determined by LAL assay (Genscript, Piscataway, NJ). EndoFit Ovalbumin was obtained from Invivogen (San Diego, CA). SIV Gag p55 was obtained from Protein Sciences Corporation (Meriden, CT) and MML (also known as Leish-111f) was produced as previously described54 (link) by the Protein Expression Laboratory at the National Cancer Institute (Frederick, MD). Adjuvants had < 1EU/mg endotoxin and were either prepared in-house as described elsewhere or were acquired from commercial sources. CpG ODN 1826 and R848 were obtained from Invivogen (San Diego, CA).
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9

Ovalbumin Immunization in Mice

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Mice were immunized with ovalbumin by intradermal injections at the base of the tail or i.v. injection into the lateral tail vein. Endotoxin free ovalbumin (EndoFit Ovalbumin, Invivogen) was used with a dose of 10 μg per injection in sterile PBS. Where noted, adjuvants were added to the immunogen, including Vaccigrade CpG-B (20 μg), Pam2CSK4 (10 μg), Pam3CSK4 (10 μg), high molecular weight Poly(I:C) (50ug) (all purchased from Invivogen), and MALP2 (1 μg, purchased from Enzo Life Sciences). For immunizations with live BCG, M. bovis BCG-Danish was acquired from the Statens Serum Institute (Copenhagen, Denmark) and cultured in Sauton medium (Difco Laboratories, BD Diagnostic Systems, Sparks, MD) with .05% Tween-80. Bacteria were grown from low passage number frozen stocks to mid-log phase and frozen in medium with 5% glycerol at −80°C in single use aliquots. For immunization, bacteria were thawed, washed and resuspended in PBS containing 0.05% Tween-80, and sonicated to obtain single-cell suspensions. Mice were vaccinated with 5 × 106 colony forming units (CFU) i.d. at the base of the tail or i.v. via lateral tail vein.
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10

Subcutaneous and Intravenous Protein Delivery

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MII was provided by Novo Nordisk (Måløv, Denmark) and was prepared fresh weekly, sterile filtered and stored at 4°C. MII and protamine sulphate were mixed 1:1 in PBS. Injections, 200 μl, were performed s.c. in the back, or i.v. retro-orbitally or into the lateral tail vein. Twice-daily doses were administered at 08:00 hours and 18:00 hours every other day. Intravenously administered ovalbumin (OVA; EndoFit Ovalbumin, InvivoGen, San Diego, Ca, USA) was used as a negative control protein in part of the experiments.
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