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14 protocols using l alanyl l glutamine

1

Protein Expression in Expi293F and HEK293S Cells

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Expi293F cells (Thermo) were maintained in Expi293 medium (Thermo) supplemented with 0.5% Penicillin-Streptomycin-Amphotericin B (Wako). HEK293S GnT1 -cells were maintained in FreeStyle293 medium supplemented with 0.5% FBS, 0.5% Penicillin-Streptomycin-Amphotericin B (Wako), 4 mM L-alanyl-L-glutamine (Wako). Cells used for protein expression were cultured in a Pro293s CDS medium (Lonza) supplemented with 0.5% FBS, 0.5% Penicillin-Streptomycin-Amphotericin B (Wako), 4 mM L-alanyl-L-glutamine (Wako).
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2

Generating Trisomy 21 and Corrected iPSC Lines

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Human iPSCs were cultured as previously described [2 (link), 22 (link)]. In brief, iPSCs were maintained on mitomycin C (Sigma)-inactivated mouse embryonic fibroblasts in human ES cell medium consisting of DMEM/F12 (Wako) supplemented with 20% KnockOut Serum Replacement (Gibco), 2 mM L-alanyl-L-glutamine (Wako), 1% MEM nonessential amino acid solution (Wako), 0.1 mM 2-mercaptoethanol (Sigma), and 5 ng/mL basic fibroblast growth factor (Katayama Chemical). Cultures were passaged every 6–8 days either manually or enzymatically using dispase II (Roche, Basel, Switzerland).
Secondary fibroblast-like cells were differentiated as described previously, with some modifications [23 (link), 24 (link)]. Briefly, embryoid bodies made from human iPSCs were cultured for 4 days in nonadherent cell culture plates in differentiation medium (80% knockout DMEM (KO-DMEM; Thermo Fisher Scientific Inc.), 1 mM L-glutamine, 0.1 mM β-mercaptoethanol, 20% FBS, and 1% nonessential amino acids.) Next, the cell aggregates were seeded into gelatin-coated plates and cultured for an additional 9 days. The outgrowing cell population was used as secondary fibroblast-like cells after at least two passages, and cultured in the medium described above. One clone each of a trisomy 21 fibroblast-derived human iPSC line (Tri21 iPSCs) and corrected disomy 21 iPSC line (cDi21 iPSC) was used in the experiments.
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3

PDAC Cell Line Cultivation Protocols

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PDAC cell lines KLM-1, MiaPaca-2, PANC-1, PK-8, PK-45P and PK-45H were purchased from RIKEN Bio-Resource Center (Saitama, Japan), PK-1 and PK-9 were purchased from Tohoku University Cell Resource Center (Sendai, Japan), and Capan-1 was purchased from American Type Culture Collection (ATCC, Manassas, USA). KLM-1, PANC-1, PK-1, PK-8, PK-45P, PK-9, PK-45H cells were cultured in RPMI1640 (WAKO Pure Chemical Industries, Osaka, Japan) supplemented with 10 % FBS and 100 mg/ml penicillin/streptomycin (WAKO Pure Chemical Industries, Osaka, Japan). Capan-1 was cultured in DMEM (WAKO Pure Chemical Industries, Osaka, Japan) supplemented with 20 % FBS, 100 mg/ml penicillin/streptomycin and 200 mmol/L L-Alanyl-L-Glutamine (WAKO Pure Chemical Industries, Osaka, Japan). MiaPaca-2 was cultured in DMEM supplemented with 10 % FBS and 100 mg/ml penicillin/streptomycin.
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4

Establishment and Maintenance of hiPSCs

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Human iPSCs (hiPSCs) were established and cultured as previously described17 (link). In brief, iPSCs were generated from either cord blood cells, or dermal fibroblast, a kind gift from Dr. Toshiyuki Yamamoto (Tokyo Women’s Medical University Institute for Integrated Medical Science, Tokyo, Japan), using a Sendaivirus vector encoding tetracistronic factors (OCT3/4, SOX2, KLF4 and c-Myc) and maintained on mitomycin C (Sigma)-inactivated mouse embryonic fibroblasts in hES medium containing DMEM/F12 (Wako), 20% KnockOut Serum Replacement (Gibco), 2 mM L-alanyl-L-glutamine (Wako), 1% MEM nonessential amino acid solution (Wako), 0.1 mM 2-mercaptoethanol (Sigma) and 5 ng/mL basic fibroblast growth factor (Katayama Chemical). Cultures were passaged every 6–8 days. This study was approved by the Ethics Committee of Osaka University Graduate School of Medicine (approval no. 13123-823). Informed consent was obtained from each patient’s guardians in accordance with the Declaration of Helsinki. All experiments were performed in accordance with the approved guidelines.
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5

Directed Differentiation of hiPSCs into EBs

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Embryoid bodies were generated by CTK medium treatment of day-7 hiPSC cultures to remove colonies from the culture dishes. Colonies were grown in differentiation medium in a suspension culture using EZ-BindShut II dishes (Iwaki, Japan). hiPSCs were induced to spontaneously differentiate in a medium composed of StemSure DMEM (Wako) supplemented with 20% StemSure serum replacement (Wako), 2 mM l-alanyl-l-glutamine (Wako), 1% MEM non-essential amino acids (Wako), and 0.1 mM 2-mercaptoethanol (Thermo Fisher Scientific). EBs were grown in suspension culture for 8 days, then plated onto gelatin-coated plates and allowed to differentiate for an additional 8 days in DMEM + 10% FCS.
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6

Cultivation of Mouse Tumor Cell Lines

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B16F10 (mouse melanoma; from the Cell Resource Center for Biomedical Research Institute of Development, Japan), MC38 (mouse colon carcinoma; kindly provided by Dr. H. Tahara, The Institute of Medical Science, University of Tokyo), LLC (mouse lung carcinoma; kindly provided by Dr. M. Sakata-Yanagimoto, Department of Hematology, University of Tsukuba) and MB49 (mouse bladder carcinoma; kindly provided by Dr. W.T. Godbey, Department of Chemical & Biomolecular Engineering, Tulane University) were cultivated in DMEM (Thermo Fisher) with 100 mM sodium pyruvate (Wako), 1% MEM nonessential amino acids solution (Wako), and 100 mM L-alanyl-L-glutamine (Wako), 4T1 (American Type Culture Collection) was cultivated in RPMI 1640 (Wako) at 37°C under 5% CO2. These media were supplemented with 10% FBS and 1% penicillin-streptomycin (Wako),
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7

Culturing Osteoblastic MC3T3-E1 Cells

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MC3T3-E1 cells subclone 4, an osteoblastic cell line derived from mouse calvaria, was obtained from the American Type Culture Collection (ATCC; Manassas, VA, USA). The MC3T3-E1 cells were cultured in α-minimum essential medium (α-MEM; Fujifilm Wako Pure Chemical) supplemented with 10% fetal bovine serum (FBS; Gibco, Grand Island, NY, USA), 1% penicillin (100 U/mL; Fujifilm Wako Pure Chemical), streptomycin (100 μg/mL; Fujifilm Wako Pure Chemical), and l-alanyl-l-glutamine (2 mM; Fujifilm Wako Pure Chemical) in 5% CO2 at 37 °C.
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8

Maintenance of iPSCs and iPSECs

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iPSCs were maintained on MMC-treated MEFs in iPS medium containing DMEM/F12 (Wako) supplemented with 20% KnockOut Serum Replacement (Invitrogen), 2 mmol/L l-Alanyl-l-Glutamine (Wako), 0.1 mmol/L monothioglycerol (Wako), 0.5% penicillin and streptomycin (Nacalai Tesque, Kyoto, Japan) and 5 ng/ml basic fibroblast growth factor (Wako). The iPSECs were maintained on collagen I-coated dishes with HuMedia-EB2 medium (KURABO, Japan), supplemented with 20 ng/ml VEGF (R & D Systems), 25 ng/ml bFGF, 0.5% penicillin and streptomycin, and 10% fetal bovine serum (FBS).
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9

Culturing INS1E and Rat Pancreatic Fibroblasts

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The INS1E cell line, a gift from Prof. Pierre Maechler,14 (link) was maintained in RPMI-1640 (Gibco, Carlsbad, CA, USA) supplemented with 10% fetal calf serum (Gibco), 0.5 mM monothioglycerol (Antioxidant, Wako, Osaka, Japan), 2 mM L-alanyl-L-glutamine (Wako), and 50 μg/ml gentamicin sulfate (Wako). Rat pancreatic fibroblasts were cultured under the same conditions as INS1E cells. Rat neonatal pancreases were collected and enzymatically digested in a collagenase/proteinase cocktail (0.1% collagenase L, Nitta Gelatin, Osaka, Japan, 0.2% dispase II, Gibco in HBSS, Gibco) for 60 mins in a reciprocating water bath shaker at 37°C. Undigested debris was removed using a nylon mesh and the cells were cultured as described below. Attached fibroblasts proliferated continuously and were sequentially passaged (sub-cultured in another dish), effectively diluting any contaminating islets and blood cells. Pancreatic fibroblasts exhibited cellular senescence after 3 to 6 passages, and were used before cell division had slowed down.
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10

Insulin Secretion Assay in INS-1E Cells

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The rat insulinoma cell line INS-1E was grown in advanced RPMI-1640 medium (Thermo Fisher
Scientific Inc., Waltham, MA, USA) containing 5% FBS, 0.5 mM monothioglycerol (FUJIFILM
Wako Pure Chemical Corp.) and 2 mM L-alanyl-L-glutamine (FUJIFILM Wako Pure Chemical
Corp.) [18 (link)]. Cells were seeded in 24-well plates (1
× 105 cells per well) and cultured for 2 days at 37°C in 5% CO2. The
medium was removed and INS-1E cells were preincubated for 1 h (5% CO2, 37°C) in
RPMI-1640 (glucose free; FUJIFILM Wako Pure Chemical Corp.) with 5% FBS and 100 mg/dl
glucose. Next, the cells were incubated for 1 h in a fresh batch of the same composition
medium with added 1,5-AG or TI. To determine the effects of 1,5-AG and TI on insulin
secretion, INS-1E cells were incubated in RPMI-1640 containing various concentrations of
1,5-AG (0, 10, 100 and 1,000 µM) and TI (0, 1, 10 and 100
µg/ml). Samples were collected in Protein LoBind® tubes and
insulin in the medium was determined with a Rat Insulin ELISA Kit (Morinaga Institute of
Biological Science, Inc.) according to the manufacturer’s protocol. To each well,
200-µl of M-PERTM Mammalian Protein Extraction Reagent
(Thermo Fisher Scientific Inc.) was added to dissolve cells for the determination of
cellular protein content with a PierceTM BCA Protein Assay Kit (Thermo Fisher
Scientific Inc.).
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