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47 protocols using β actin

1

Protein Isolation and Western Blot Analysis of CLL MNCs

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Isolation of proteins from MNCs of CLL was conducted as previously reported [43 (link)] and 30 μg of proteins were tracked on gels and transferred to polyvinylidene difluoride membranes. After this process, the membranes were blocked in 4% milk solution (Serva Electrophoresis GmbH, Heidelberg, Germany) for 1 h at +40 °C. Then, the membranes were incubated with appropriate primary antibodies. The primary antibodies used in our study were against S100A4 (Cell Signaling Technology, Inc.), S100A8 (Abcam, Cambridge, UK), S100A9 (Abcam), S100A12 (Elabscience Biotechnology Co., Ltd, Wuhan, China), β-actin (R&D Systems, Inc, Minneapolis, MN, USA), phospho-NF-κB p65 (Ser536, Cell Signaling Technology), and NF-κB (Santa Cruz Biotechnology, Dallas, TX, USA). Goat antirabbit immunoglobulin (R&D Systems) was used as a secondary antibody, except for β-actin where goat antimouse immunoglobulin was used. The degree of expression of the tested proteins was determined by densitometric analysis and the ChemiDoc Imaging System (Bio-Rad Laboratories, Hercules, CA, USA). The obtained values were normalized to β-actin.
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2

Western Blot Analysis of Signaling Proteins

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Proteins from MPN-derived MNC were isolated and processed as previously reported [9 (link)]. Equal amounts of protein (30 μg) were run on polyacrylamide gels and transferred to polyvinylidene difluoride membranes. The membranes were blocked with 4% milk (Serva Electrophoresis GmbH, Heidelberg, Germany) for 1 h at room temperature and probed with primary antibodies directed against HIF-1α (Elabscience, Wuhan, China), VEGF (Elabscience), eNOS (Elabscience), β-actin (R&D Systems, Inc, Minneapolis, Minnesota), phospho-STAT5 (R&D Systems), STAT5 (R&D Systems), phospho-AKT (R&D Systems), AKT (R&D Systems), pmTOR (Cell Signaling Technology Inc., Beverly, USA) and mTOR (Cell Signalling Technology). Peroxidase-conjugated goat anti-rabbit immunoglobulin (R&D Systems) was used as a secondary antibody, except goat anti-mouse immunoglobulin (R&D Systems) was used for β-actin. The protein levels were imaged with a ChemiDoc Imaging System (Bio-Rad Laboratories, Hercules, CA, USA) and estimated by densitometric scanning of the blots using the Image Lab (Bio-Rad Laboratories, Inc. Version 6.0.0.25) software tool and normalized to β-actin.
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3

Western Blot Analysis of E-Cadherin

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The protein samples were extracted using 1X SDS loading buffer. Protein concentration was determined using bicinchoninic acid assay quantification. A total of 20 µg protein was loaded in each well, separated with SDS-PAGE (10% gels) and blotted on polyvinylidene fluoride membranes (100 v for 120 min). The membranes were blocked with Tris-buffered saline with Tween-20 (TBST) solution containing 5% fat-free milk for 1 h at room temperature. Primary antibodies for E-cadherin (1:1,000; cat. no. MAB7481; R&D Systems, Inc.) and β-actin (cat. no. ab8229; Abcam, Cambridge, UK) were incubated overnight at 4°C. The membranes were washed using TBST 3 times and incubated with horseradish peroxidase-conjugated whole immunoglobulin G Affinity-Purified Antibodies (Goat Anti-Rabbit; 1:5,000; cat. no. 111-005-045; Jackson Immuno Research Laboratories, Inc., West Grove, PA, USA) at room temperature for 1 h. Signals were detected using electrochemiluminescence reagent (Sigma-Aldrich; Merck KGaA). The bands were analyzed using Image Lab software (version 3.0; Bio-Rad Laboratories, Inc., Hercules, CA, USA).
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4

Ischemic Cerebrum Protein Expression

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Ischemic cerebrum cells and tissues were lysed using a RIPA Lysis Buffer. Total protein was extracted using a Total Protein Extraction Kit (Takara) according to the manufacturer's instructions, and the quality was detected using the Bradford method. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was used to separate the protein extracts. An equal amount of protein was transferred onto a polyvinylidene fluoride membrane, and incubated with primary antibodies (anti-p-mTOR, anti-Beclin-1, anti-Mcl, 1:500, [Sigma, USA]) or β-actin (1:500, [R&D, China]) at 4°C for 24 h. The membranes were then incubated with the secondary antibody (1:1000) for another 2 h at room temperature. The ECL method and Image J software were used to visualize the bands. The antibodies were purchased from Abcam (UK). β-actin acted as an internal control.
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5

Colorectal Cancer Tissue Protein Expression

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Cancer tissue and adjacent normal tissueous tissue were selected from 16 patients with colorectal cancer, including 8 patients with colon cancer and 8 with rectal cancer. There were 6 CC genotypes, 5 CT genotypes, and 5 TT genotypes at rs7101 locus, 6 GG genotype, 5 GT genotype, and 5 TT genotype at rs1063169 locus. The protein was extracted using a T-PER tissue protein extraction kit (Thermo Scientific, Waltham, America), strictly following the kit instructions. Using β-actin as an internal reference protein, the c-Fos protein expression of 1 subject of each rs7101 locus CC, CT, TT genotype and 1 subject of each rs1063169 locus GG, GT, TT genotype was detected by Western blot (c-fos: Catalog # AF7254-SP, β-actin: Catalog # MAB8929-SP; R&D Systems, Minneapolis, MN) (Fig. 1). Concentrations of c-Fos were measured in the serum using an enzyme-linked immunosorbent assay (ELISA) kit (Catalog # CSB-E09261 h; Cusabio Biotech Co. Ltd, Newark, NJ).
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6

Immunoblotting Analysis of Cell Signaling

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Cells after SC99 treatment were prepared for immunoblotting according to our previous method [35 (link), 40 (link)]. A specific primary antibody against cyclin D2 (CCND2) was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA); antibodies against Bcl-2, Bcl-xL, Caspase-3, STAT3, p-STAT3(Tyr705), c-Src, p-Src, JAK2, p-JAK2, E2F-1, AKT, p-AKT, ERK, p-ERK, mTOR, p-mTOR, and PARP were purchased from Cell Signaling Technology (Danvers, MA). Antibodies against VEGF, β-actin, α-tubulin, anti–mouse immunoglobulin G (IgG) and anti–rabbit IgG horseradish peroxidase conjugated antibody were purchased from R&D Systems (Minneapolis, MN). Anti-Myc antibody and GAPDH was purchased from Sigma (St. Louis, MO).
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7

Quantifying Macrophage Protein Levels

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To quantify the protein levels of E-FABP, A-FABP, phosphorylation and total STAT1 and STAT2, macrophages with designated treatments were lysed in buffers with protease and phosphorylation inhibitors. Protein concentration was determined by BCA assay (Thermo Scientific). β-actin was used as a loading control. Mouse E-FABP, A-FABP, β-actin antibodies were from R&D Systems. Mouse STAT1, STAT2 and their phosphorylation antibodies were from Cell Signaling Technology.
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8

Signaling Pathway Analysis in MDSCs

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Western blot analysis was performed to detect the levels of CD126, gp130, ADAM10, ADAM17, and SOCS1–3 proteins, as well as total and phosphorylated JAK1, JAK2, TYK2, STAT1, and STAT3 in MDSCs and CD33+ control cells. Cell lysates were separated by SDS-PAGE and transferred to polyvinylidene difluoride membranes for western blot analysis using mouse anti-human CD126, gp130 (R&D Systems, Inc., Minneapolis, MN, USA), SOCS1 (Medical & Biological Laboratories Co., Ltd., Nagoya, Japan), SOCS2–3 (R&D Systems, Inc.), and β-actin. Rabbit anti-human antibodies were used to detect JAK1, JAK2, TYK2, STAT1, STAT3, p-STAT1, p-JAK1, p-JAK2, p-TYK2, and p-STAT3 (Cell Signaling Technology, Danvers, MA, USA). Membranes were incubated with primary antibodies overnight at 4°C, as described previously (7 (link)). Membranes were then incubated with horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG Ab (Zhongshanjinqiao, Beijing, China), and protein bands were visualized using the SuperSignal West Pico Chemiluminescent Substrate kit (Pierce Biotechnology, Rockford, IL, USA). The relative densities of protein bands were determined by comparing the band densities of proteins of interest to those of β-actin, using Quantity One software. We used the density ratio of phosphorylated protein to total protein to compare the expression of these phosphorylated proteins.
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9

Antibody and Compound Sourcing Protocol

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The antibodies to GPX4 and β-actin were obtained from R&D systems (Abingdon, UK) and Thermo Scientific (Dartford, UK) respectively. Curcumin, quercetin, rutin, EGCG, tannic acid and phytic acid were obtained from Sigma-Aldrich Company Ltd. (Dorset, UK) (Curcumin cat. no. C7727; EGCG cat. no. E3768). Erastin was purchased from Bertin Bioreagent (Montigny-le-Bretonneux, France).
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10

Protein Expression Analysis Protocol

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Cells were washed with ice-cold PBS and lysed on ice for 30 min with lysis buffer containing 20 mM Tris-HCl, 1% NP-40, 150 mM NaCl, 10% glycerol, and protease inhibitor cocktail (Thermo Fisher Scientific). After clearing by centrifugation, protein concentration was determined by Bradford protein assay kit (Pierce). Protein separation and detection were performed using an automated capillary electrophoresis system and 12–230 kDa separation module (ProteinSimple). Anti-rabbit or anti-mouse detection module according to the manufacturer’s instructions. Primary antibodies used were as follows: PNCA (Cell Signaling Technologies, 13110), BRCA1 (Cell Signaling Technologies, 9010), RAD51C (Novus Biologicals, NB100–177), BRIP1 (Novus Biologicals, NBP1–31883), MSH2 (Novus Biologicals, NBP3–07211), FANCD2 (Novus Biologicals, NB100–182), FEN1 (Novus Biologicals, NB100–150), XRCC2 (Abcam, ab180752), and β-actin (R&D Systems, MAB8929). Data were analyzed and displayed in Compass for SW (Version 3.1.7).
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