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16 protocols using exoquick tc exosome isolation reagent

1

Exosome Isolation from Cell Culture

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Exosomes were isolated from culture media of cells grown with 10% Exo-FBS (FBS depleted of exosomes, System Biosciences) in a 150-mm plate (15 mL medium volume) with ExoQuick-TC Exosome Isolation Reagent (System Biosciences), according to the manufacturer’ s instruction.
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2

Exosome Isolation from Cell Culture

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After 24 h of culture in serum-free medium, the supernatant of normal fibroblasts and cancer-associated fibroblasts culture was collected. The cells were incubated with the complete medium containing serum to a density of about 80%, discarded the supernatant, and continued culture with serum-free medium. More than 10 mL of cell culture supernatant was collected after 48 h. The residual cells and debris were removed by centrifugation at 3,000 × g for 15 min at 4 °C. Transfer the supernatant to a new centrifuge tube and add 2 mL of ExoQuick-TC™ Exosome Isolation Reagent (SBI, System Bioscience) for every 10 mL of culture medium. Then agitate the tube slightly until the sample is entirely mixed. After storing at 4 °C for 12 h, centrifuge at 5,000 × g for 30 min, discard the supernatant, and the precipitate is exosomes.
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3

Exosome Isolation and Purification

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Exosomes were prepared from cell supernatants with the following differential centrifugation: 300 g at 4°C for 20 min, 2000 g at 4°C for 20 min, 10 000 g at 4°C for 30 min, followed by filtration through a 0.22-µm filter. Exosomes were then concentrated using a 100-kD ultrafiltration tube (Millipore, USA). ExoQuick-TC exosome isolation reagent (System Biosciences, USA) was used to precipitate exosomes by centrifugation at 1500 g at 4°C for 30 min. Exosomes were re-suspended in PBS and incubated with anti-CD63 antibody, followed by a corresponding secondary antibody coupled to magnetic beads (Miltenyi Biotec, Germany) to further purify the exosomes. The Miltenyi Biotec MidiMACS separator combined with LD columns (catalog no. 130-042-901) was used for exosome isolation.
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4

Isolation and Analysis of Exosomes

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ExoQuick-TC exosome-isolation reagent (EXOTC50A-1), SeraMir exosome RNA-isolation kit (RA808A-1), exosome-specific marker anti-αCD63 antibody (EXOABCD63A-1), and florescence exosome-preparation reagent (EXDC300A-1) were from System Biosciences (SBI, Palo Alto, CA, USA). Penicillin-streptomycin (PS) solution, trypsin-EDTA solution, RPMI medium, and α-MEM media were obtained from Life Technologies GIBCO (Grand Island, NY, USA). Fetal bovine serum (FBS) was from Sigma-Aldrich (St. Louis, MO, USA). Antibodies used for immunoblotting were against phosphorylated p53 (Cell Signaling Technology, Beverly, MA, USA), BAX, BCL2, CASP9, CASP3, β-actin (Abcam, Cambridge, MA), and cytochrome c (ENZO Diagnostics Inc., Farmingdale, NY, USA).
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5

Extraction and Characterization of Exosomes from hUC-MSC

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hUC-MSC were cultured without serum for 48 h and cell culture supernatant was collected. Culture supernatant was centrifuged to remove dead cells and cell debris, as described in the previous study [20 ]. After centrifugation, culture supernatant was filtered with a 0.22-μM pore filter (Merck KGaA, Darmstadt, Germany). The filtered supernatant was concentrated using a 150-kD Protein Concentrator (Millipore, Massachusetts, USA) and filtered again with a 0.22-μM pore filter. Exosomes were isolated from the final filtered supernatant with ExoQuick-TC exosome isolation reagent (System Biosciences, California, USA) according to the manufacturer’s protocol. Finally, the precipitated exosomes were resuspended in sterile phosphate-buffered saline (PBS) and stored at − 80 °C.
Characterization of extracted exosomes was performed by transmission electron microscopy (TEM) to observe the morphology. Nanoparticle tracking analysis (NTA) was conducted to analyze the particle size and video image of exosomes. Western blot was performed to detect two exosome surface markers (TSG101, CD9, Calnexin, and CD63).
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6

Extracellular Vesicle Isolation Protocol

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After treatment, culture supernatants were spun at 250 g to remove cells. Supernatants were then filtered using a 0.45 µm syringe filter (MilliporeSigma, Sigma-Aldrich, St. Louis, MO, United States). Filtrates were then mixed with an aliquot of ExoQuick-TC Exosome Isolation Reagent (System Biosciences) equal to 1/5 the total volume of culture supernatant and incubated at 4°C overnight. Mixtures were then spun at 3,000 g for 15 min at 4°C, and an aliquot of this supernatant (EV-depleted fraction) was saved. Following another 3,000 g spin for 15 min at 4°C, all remaining traces of fluid were removed. Pellets were then resuspended in particle-free PBS.
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7

Exosome Isolation Protocol for Cell Media

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CPC-exosome isolation was performed using ExoQuick-TC™ Exosome Isolation reagent (System Biosciences, Palo Alto, CA, USA), following the procedure outlined by the manufacturer. To prepare the exosome media prior to ExoQuick treatment, the concentration was increased from 50 to 130 µl using an Amicon Ultra filter (EMD Millipore, Billerica, MA, USA) with a 100,000-molecular weight cutoff (14 (link)).
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8

Exosome Isolation from Fibroblast Culture

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Exosomes were isolated from cell culture media of primary fibroblasts that were grown in DMEM-F12 (Sigma-Aldrich) supplemented with 10% Exo-FBS (FBS depleted of exosomes, SBI, System Biosciences) and 1X antibiotic-antimycotics (Life technologies, Milan, Italy). Culture media were centrifuged at 3000 g for 15 minutes at 4°C or room temperature to remove cellular debris. The supernatants were transferred to sterile tubes in an appropriate volume of the ExoQuick-TC™ Exosome Isolation Reagent (SBI, System Biosciences), considering 2 ml of ExoQuick-TC™ solution for every 10 ml of cell culture medium. Then, the tubes were subjected to mild agitation until the separation between the two phases was no longer visible. Finally, the tubes were kept at 4°C O/N (12 hours at least were necessary). The following day, the tubes were centrifuged firstly at 1500 g for 30 minutes, and then at 1500 g for 5 minutes (at 4°C or RT). At the end of the steps, white/beige exosomal pellets appeared.
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9

Isolation and Characterization of hucMSC-Derived Exosomes

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HucMSCs were provided by Shandong Qilu cell therapy Engineering Technology Co., Ltd. For hucMSC-exo extraction, hucMSCs at 3–5 passages were used according to our previously described methods.19 (link) Briefly, hucMSCs culture supernatant was collected and centrifuged at 3000 g for 15 min to remove dead cells and cell debris. The resultant supernatant was filtered once through 0.22 µM pore filter (Merck KGaA, Darmstadt, Germany) to eliminate cell debris and bacteria. The filtered supernatant was concentrated with a 150-kD Protein Concentrator (Millipore, Massachusetts, USA) and filtered once again using 0.22-μM pore filter to eliminate bacteria further. The final supernatant was subject to ExoQuick-TC exosome isolation reagent (5: 1, v/v; System Biosciences, California, USA) and incubated at 4°C for 12 h. Then, the exosomes pellet was collected after centrifuging at 15,000 g for 30 min and resuspended in PBS. Finally, it was stored at −80°C after quantified the protein concentration by the BCA method.
For characterization, hucMSC-exo were detected using transmission electron microscopy (TEM) to observe the morphology and size. Particle size distribution was assessed by flow nano-Analyser (NanoFCM, Xiamen, China). Finally, the typical exosomal markers were validated by Western blot. Detailed procedures are provided in Supplementary Materials.
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10

Epithelial Cell Culture Protocol

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Epithelial cell culture medium (BEGM) was obtained from Lonza (Walkersville, MD). DHA (cis-4, 7, 10, 13, 16, 19-docosahexaenoic acid) and arachidonic acid (cis-5,8,11,14-eicosatetraenoic acid) were purchased from MP Biomedicals (Solon, Ohio). Kits for measuring soluble proteins (IL-6, IL-8, TNFα, IL-10) in culture supernates (DuoSet ELISA) were from R&D Systems (Minneapolis, MN). For resolvin D1, kits were from Cayman Chemical (Ann Arbor, MI). ExoQuick-TC exosome isolation reagent was purchased from System Biosciences (Palo Alto, CA). All other reagents were from Fisher Scientific (Pittsburgh, PA) unless otherwise specified.
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