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3 protocols using ctbp1

1

Western Blotting Procedure for Protein Analysis

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The Western blotting was performed as previous studies.23, 24 Briefly, cell samples were mixed with lysis buffer (0.01 M Tris‐HCl, pH 7.4; KCl, 0.15M; NaF, 0.1M; EDTA, 0.002M; β‐mercaptoethanol, 0.012 M; Nonidet P‐40, 0.5%) and lysed for 2 hours at 4℃ in the presence of a mixture of protease inhibitors (leupeptin, 0.01 mg/mL; Na3VO4, 0.001M; Pefabloc, 0.3 mg/mL; okadaic acid, 0.01 μM). The proteins were mixed with sample buffer to denature and heated at 95°C for 1 min, separated through SDS‐PAGE (10% polyacrylamide gel) and transferred onto membranes of PVDF. Membranes were blocked with fat‐free milk (5% in TBST: 50 mM Tris/pH 7.5, containing 0.15M NaCl and 0.05% Tween‐20) for 60 min at room temperature and probed overnight with primary antibodies at 4°C. The blots were washed, kept in the secondary antibody for 60 min at room temperature, the bands observed and evaluated through UVP Bio Imaging systems. The primary antibodies used are as list: CtBP1 (ab129181, Abcam, Cambridge, MA, USA), N‐cadherin (ab76011, Abcam), E‐cadherin (ab15148, Abcam), Vimentin (#5741, Cell Signaling Technology, Danvers, MA, USA), CCL2 (@2027, Cell Signaling Technology), p65 (#8242, Cell Signaling Technology), p‐p65 (#3033, Cell Signaling Technology), Lamin A/C (#4777, Cell Signaling Technology) and β‐actin (A5441, Sigma, St. Louis, MO, USA).
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2

Immunodetection of Epigenetic Regulators

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Antibodies against HA (3F10; Roche), IRF1 (D5E4; Cell Signaling Technology), STAT1 (Cell Signaling Technology), STAT1 Y701-P (Cell Signaling Technology), STAT1 S727-P (Cell Signaling Technology), STAT3 Y705-P (Cell Signaling Technology), USP7/HAUSP (A300-033A-3; Bethyl Laboratories, Inc.), CHD4 (3F2/4; Abcam), MTA1 (D40D1; Cell Signaling Technology), HDAC1 (10E2; Cell Signaling Technology), RBBP7 (V415; Cell Signaling Technology), CTBP1 (Abcam), Toxofilin, TBP (Abcam), H3K4me3 (Diagenode), H3K9ac (17-658; EMD Millipore), anti-acetyl–Histone H4 (06-866; EMD Millipore), H3K27ac (17-683; EMD Millipore), and Irgb6 (gift of J. Howard, Instituto Gulbenkian de Ciência, Oeiras, Portugal) were used in immunofluorescence, immunoblotting, and/or ChIP assays. Immunofluorescence secondary antibodies were coupled with Alexa Fluor 488 or Alexa Fluor 594 (Thermo Fisher Scientific). Secondary antibodies used in Western blotting were conjugated to alkaline phosphatase (Promega). Recombinant human and mouse IFN-γ (Roche) were used to stimulate the aforementioned cells.
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3

Western Blot Antibody Optimization

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Human THP-1 and HEK 293T cells were obtained from the 1:1,000); TLR4 (ABCAM, 1:500); CtBP1 (ABCAM, 1:100); CAV1 (Beyotime, 1:500); ABCA1 (ABCAM, 1:200); Histone H2A (ABCAM, 1:500); and β-actin, (Proteinteck, 1:2,000). Secondary antibodies were: HRP-labelled Goat Anti-Mouse IgG(H+L) (Beyotime, 1:1,000) and horseradish peroxidase (HRP)-labelled Goat Anti-Rabbit IgG(H+L) (Beyotime, 1:1,000). Immunoreactive bands were visualized with Tanon 5500 (China) and BeyoECL Plus (Beyotime, China).
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