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16 protocols using anti th

1

Quantitative Analysis of Lung Tissue Markers

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Lung paraffin sections were slided into 3μm-thick, dewaxed in xylol 5min for twice, and then rehydrated in 100% ethanol 5min for twice, 75% ethanol 5min and tap water for 5min. The sections were washed by phosphate-buffered saline (PBS) 3min for twice. 3% Hydrogen peroxide and methanol mixed together and the slides were incubated in order to inactive endogenous peroxidases. Then the slides were put into 0.1% pepsin for antigen retrieval. Next procedure was blocked in protein block solution and incubated with primary antibodies: TGF-β1 (Abcam, USA, 1:400), anti-GAP43 (Abcam, USA, 1:1000), anti-TH (Abcam, USA, 1:300), Collagen I (Bioss, China, 1:300), anti-CollagenIII (Bioss, China, 1:300) at 37°C for 2h, then overnight at 4°C. The slides were washed by PBS, then followed by incubation with biotinylated rabbit anti-IgG (ZSGB-BIO, China) and stained with DAB kit (ZSGB-BIO, China) and hematoxylin. The software (Image-pro plus 6.0, Meida Cybernetics LP) was applied to the analysis of the lung section. We measured the density of positive cells in total lung section.
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2

Protein Expression Analysis in PD Model

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After treated with MPP+ or OPA, collected SH-SY5Y cells were lysed by RIPA (Beyotime, China). The lysate was incubated on ice for 30 min and then centrifuged at 12,000 g for 5 min at 4°C. Meanwhile, the taken-out striatum of PD mice model was homogenized by adding an appropriate amount of RIPA according to the quality, and then, it was centrifuged at 1,000 g for 15 min at 4°C. Both supernatants were collected, and the concentration of total protein in supernatants was quantified using BCA protein assay kit (Beyotime, China). Next, the protein was subjected to 12% polyacrylamide gels and transferred onto a polyvinylidene fluoride (PVDF) (Millipore, United States). After blocking for 1 h with 5% non-fat milk at room temperature, the membrane was incubated with primary antibodies, including anti-Bax, anti-Bcl-2, anti-cleaved-caspase3, anti-β-actin (Cell Signalling Technology, United States), and anti-TH (Abcam, United Kingdom) overnight at 4°C. Following being washed by PBS/Tween-20 for three times, the membranes were incubated in the secondary antibody (1:2,000) at room temperature for 1 h. After being rinsed, bands were visualized using western blotting detection system (Bio-rad ChemiDoc Touch, United States) and quantified with NIH ImageJ software (National Institutes of Health, Bethesda, United States). β-actin was named as the internal control.
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3

Immunohistochemical Analysis of Cortical Development

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Tissues from two offspring/litter and three to four litters/treatment group (n = 6–8 pups/treatment group) were used for all in vivo immunohistochemistry experiments. Tissue was coronally sectioned using a Leica cryostat at 30 μm thickness and serially collected. Animal numbers were randomized for blinded counting. The primary antibodies used for staining of select cortical markers for E18.5 samples were anti-GFP 1:1000 (Aves Lab, Tigard, OR, CAT#GFP-1020), anti-Ki67 (Abcam, Cambridge, MA, CAT#ab15580), anti-Sox2 1:1000 (Abcam, Cambridge, MA, CAT#ab97959), anti-Tbr2 1:1000 (Millipore, Billercia, MA CAT#AB15894), anti-RELN 1:1000 (Invitrogen, CAT#PA5–47537), anti-CUX1 1:100 (Atlas Antibodies, St. Louis, MO, CAT#HPA003277), anti-Ctip2 1:300 (Abcam, Cambridge, MA, CAT#ab187668), and anti-SATB2 1:1000 (Abcam, Cambridge, MA, CAT#ab92446). The primary antibody used for staining of neuronal populations of PND70 samples was anti-TH (Abcam, Cambridge, MA, CAT#ab76442). Primary antibody incubation occurred at 4° C overnight, following which sections were incubated with secondary antibodies (goat anti-chicken 488, CAT#A11039, goat anti-rabbit 568, CAT#A11011 and goat anti-mouse 568, CAT#AB175473). Sections were then washed and incubated with DAPI nuclear stain (Thermo-Fisher, CAT#D1306).
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4

Western Blot Analysis of Protein Expression

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The brain tissues of mice and cells were homogenized in lysis buffer containing protease inhibitors. The homogenate was centrifuged at 14000 g for 15 min at 4°C and the protein concentration was determined using the BCA kit. 30 μg lysate was loaded onto 10% SDS-PAGE. The proteins were transferred to PVDF membranes (Millipore, MA, USA). The membranes were blocked for 1 h in 5% dry milk and then incubated overnight with one of the following primary antibodies: anti-iNOS (ab178945), anti-Pro-caspase-1 (ab179515), anti-ANT (ab102032), anti-Cyp D (ab16045) (Abcam, Cambridge, MA, USA), anti-TH (#2792), anti-COX2 (#12282), anti-p-p65 (#3033), anti-Cleaved-caspase-1 (#89332), anti-Cyto C (#4280), anti-VDAC (#4866), anti-COX4 (#4850), or anti-β-actin (#3700) (Cell Signaling Technology, Beverly, USA). After washing 3 times in TBST for 5 min each, the membranes were incubated with goat anti-mouse, anti-rabbit, or anti-rat HRP for 1 h at room temperature. Then, the membranes were washed 3 times in TBST for 5 min each. The signal was visualized using an ECL chemiluminescence kit (Amersham Biosciences/GE Healthcare; Piscataway, NJ).
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5

Immunohistochemical Analysis of Neurons

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Primary hippocampal or nigral neurons were fixed with 4% paraformaldehyde (PFA) plus 4% sucrose for 10 minutes. The primary antibodies used in this study were anti-microtubule associated protein 2 (MAP2, Abcam) and anti-TH (Abcam). The secondary antibodies were anti-mouse Alexa-488, anti-rabbit Alexa568, and anti-chicken AMCA (Molecular Probes and Jackson Laboratories). Analyses and image acquisitions were performed using an Olympus Fluoview1000 confocal microscope.
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6

Immunohistochemical Analysis of Atrial Tissue

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Immunohistochemistry was performed on paraffin-embedded atrial sections. Slices were incubated with anti-TH (Abcam) and anti- GAP43, Abcam) overnight at 4 °C. The slides were treated with peroxidase-conjugated goat anti-rabbit IgG (Zhongshan, China) at 37 °C for 20 min.
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7

Immunocytochemical Analysis of Neural Cell Markers

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Cultured cells were fixed 4% paraformaldehyde, permeabilized with 0.15% Triton X-100 in PBS (PBST). blocked with 3% FBS in PBST, followed by incubation with the following primary antibodies overnight at 4 °C: anti-GFP (Abcam, Cambs, UK; ab13970; 1:1000), anti-Tuj1 (Abcam, Cambs, UK; ab78078; 1:1000), anti-TH (Abcam, Cambs, UK; ab112; 1:1000 or Santa Cruz, Heidelberg, Germany; sc-25269; 1:100), anti-GFAP (Abcam, Cambs, UK; ab7260; 1:1000), anti-S-100β (Sigma, Saint Louis, MO, USA; S2532; 1:250), anti-Nestin (Abcam, Cambs, UK; ab134017; 1:1000), anti-PAX6 (Abcam, Cambs, UK; ab195045; 1:500), anti-MAP2 (Sigma, Saint Louis, MO, USA; M4403; 1:1000 or Abcam, Cambs, UK; ab32454, 1:200). Immunoreactivity was visualized using appropriate Alexa Fluor-conjugated secondary antibodies and observed using the confocal microscope (Nikon, Tokyo, Japan, A1R HD25). The cell nuclei were visualized by staining with DAPI (Beyotime, Shanghai, China; C1002) at 0.5 μg/mL for 10 min.
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8

Immunohistological Analysis of Midbrain

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The midbrains were fixed and processed for immunostaining as described previously [20 (link)]. Immunohistological analysis was performed using anti-TH (1:1000; Abcam, Cambridge, CA, USA) and IBA-1 (1:200, Proteintech, Chicago, IL, USA). Three researchers counted the number of TH- and IBA-1 positive cells in SN, and the average of these scores were reported.
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9

Immunohistochemistry of Eyecups

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Eyecups were fixed in 4% PFA for 2 h at room temperature. The specimens were cryoprotected in 15% and 30% sucrose solutions at 4 °C. Cryo-sections were incubated with anti-STT (rabbit, 1:1000; BMA Biomedicals, Augst, Switzerland) and anti-TH (rabbit, 1:1000; Abcam, Cambridge, UK) antibodies overnight, followed by the corresponding secondary fluorescent antibodies (goat-anti-rabbit, AlexaFluor-488; Life Technologies, ThermoFisher Scientific, Budapest, Hungary; 1:1000) for 2 h. For the controls, we omitted the primary antibodies from the incubation steps, which resulted in non-staining. Photographs were taken with an Olympus Fluorview FV-1000 Laser Confocal Scanning Microscope (Olympus, Tokyo, Japan), using the same settings for one marker.
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10

Immunohistochemical analysis of mouse brain

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Harvested mouse brain tissues were fixed in 4% paraformaldehyde (PFA) and embedded in paraffin or OTC (SAKURA, USA). Specimen was cut to 4-μm-Paraffin-embedded brain sections or 40-μm-free-floating mouse brain sections. Sections were washed and blocked in 5% BSA, 0.3% Triton X-100 for 30 min and incubated overnight with anti-TH (1:500, Abcam, USA) antibody, anti-RIPK1 antibody (1:1,000, Abcam, USA,), anti-RIPK3 (1: 1000, Abcam, USA,), or anti-pMLKL (1:500, Abgent, China) at 4 °C. The slides were washed three times in PBST and incubated with AlexaFluor 488-conjugated donkey anti-rabbit or AlexaFluor 594 anti-mouse IgG secondary antibodies (Invitrogen), and image were acquired using a confocal microscope (Zeiss, Germany). Mouse miR-425 in situ hybridization (ISH) was performed on paraffin-embedded brain sections using a microRNA ISH buffer set and a miRCURY LNA miR-425 probe (Exiqon, Denmark) according to the manufacturer’s instructions.
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