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17 protocols using p4957

1

Glioblastoma Clonal Cell Culture Protocol

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The GBM clonal cell culture, U3065−c271 [28 (link)], was cultured in neural stem cell media (1:1 mix of DMEM-F12 GlutaMAX medium and Neurobasal medium (Life Technologies/GIBCO-Invitrogen) containing 1% penicillin G/streptomycin sulfate (Sigma-Aldrich, St. Louis, MO), supplemented with B-27 without vitamin A (1:50; Invitrogen), N2 supplement (1:100; Invitrogen), 10 ng/mL EGF and 10 ng/mL FGF-2 (PeproTech, Rocky Hill, NJ). Cells were seeded in poly-L-ornithine (P4957, Sigma-Aldrich) and laminin (L2020, Sigma-Aldrich) coated 384-well plates (164688, Thermo Fisher Scientific) at a density of 1000 cells/well using a BioMek 4000 (Beckman Coulter). All cells were seeded 24 h prior to treatment with compounds.
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2

Neural Induction of iPSCs

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iPSCs were differentiated into neural lineage by following a published protocol35 (link). In brief, iPSCs were dissociated into small clumps with Accutase and seeded on polyornithine (0.1 mg/ml, P4957, Sigma) and laminin (4 μg/ml) pre-coated 4-well-plates (179820, Nunc) and cultured in mTSER supplemented with Y-27632 (10 μM). The day after, cell culture media were changed to N2B27 medium (1:1 mix of DMEM-F12 (31331093, Gibco) and Neural Basal Medium (1103049, Gibco)) supplemented with N2 (17502048, Gibco), B27 (17504044, Gibco), Noggin (100 ng/ml, 78060.1, STEMCELL), Y-27632 (10 μM), and 1% PS. The media were replaced every 3 days.
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3

Immunocytochemistry and RNA-FISH Analysis

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The cells were seeded on the coverslips pre‐coated with 5 µg mL−1 poly‐L‐ornithine (P4957, Sigma–Aldrich) for 30 min, and grown for 24 h followed by fixation using 4% paraformaldehyde. The cells were then washed thrice in PBS and permeated using 0.5% Triton X‐100 (Sigma–Aldrich). The cell were then blocked with 4% IgG‐free Bovine Serum Albumin and incubated with the primary antibody (see Table S5, Supporting Information) for 4–16 h. After washing thrice with PBS, the cells were incubated with the secondary antibody for 1 h and then fixed using 4% paraformaldehyde. After two further PBS washes, the cells were examined using a fluorescence in situ hybridization (FISH) kit (GenePharma, F16501/50); the RNA FISH probes are listed in Table S4 (Supporting Information). The cells were then washed once with water, sealed with nail polish, and photographed under a fluorescence microscope (Leica TCS SP8, Solms, Germany).
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4

Fabrication of PLO-Laminin Coated Substrates

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In order to achieve the PLO coating on glass coverslip, first it was cleaned with ethanol and acetone by sonication. The cleaned glass coverslip was incubated in 30% PLO commercial stock (Sigma P4957, in PBS) at 37 °C in a 5% CO2 incubator overnight. After the incubation, the coverslip was washed with sterile water and was dried and sterilized under UV for 20 min. The punched PDMS replica was cleaned with water followed by ethanol under sonication and then air-dried. It was incubated in DMEM/F-12 and Neurobasal medium (1:1) supplemented with 100 μg/ml penicillin-streptomycin (Biochrom) and 2 mM l-gluta-mine (Biochrom) (PSG), N2 and B27 supplement (N2B27, Thermo Fisher) at 37 °C in a 5% CO2 incubator for two days. After the incubation, the PDMS replicas were washed under sonication with sterile water and dried and sterilized under UV for 20 min. The dried PDMS replica was placed and gently pressed on the PLO-coated glass cover-slip. Subsequently, Laminin (5 μg/ml, LN521, biolamina) (PLO-Laminin), was applied inside the chambers. The prepared assembly was placed under desiccation to remove air bubbles from the micro-channels. Afterward, the assembly was incubated at 37 °C for 2 h or at room temperature overnight.
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5

Isolation and Culture of DRG Neurons

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On day 10 after the first injection, PBS- and cisplatin-treated WT mice were euthanized with C02 and perfused with ice-cold PBS. DRGs were quickly and carefully removed and trimmed in ice-cold DMEM, digested with Trypsin (0.3 mg/ml, Worthington, #LS003702) and collagenase D (1.5 mg/ml, Sigma, #11088858001) for 40 min at 34°C. Debris was removed by two successive centrifugations (6 minutes at 600 rpm) and cells were plated onto coverslips coated with 0.01% poly-L-ornithine (Sigma, P4957) and incubated overnight at 37°C with 5% CO2 in serum free DMEM as previously described [4 (link)].
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6

Tamoxifen-induced OPC differentiation

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Tamoxifen was administered to P5 Tns3flox; Pdgfrα-CreERT; Rosa26stop-floxed-YFP and Tns3flox; Pdgfrα-WT; Rosa26stop-floxed-YFP littermates. Brains were dissected out at P7 in order to MACSort OPCs using an anti-PDGFRα antibody coupled to magnetic beads. OPCs were plated in poly-l-ornithine (Sigma, P4957)-coated µ-Slide 8 Well Glass Bottom slide (ibidi, 80827) at 40,000 cells/mm2 in OPC proliferative medium: DMEM/F12 (Life Technologies, 31331028), 5 mM HEPES buffer (Life Technologies, 15630056), 0.6% glucose (Sigma, G8769), 1× penicillin/streptomycin (Life Technologies, 15140122), N2 supplement (Life Technologies, 17502048), B27 supplement (Life Technologies, 17504044), 20 ng/µl EGF (PeproTech, AF-100-15), 10 ng/µl FGF-basic (PeproTech, 100-18B), 10 ng/µl PDGF-AA (PeproTech, 100-13A), and 20 μg/ml insulin (Sigma, I6634). After 3 days of proliferation, medium was replaced by growth factor-depleted medium. Cell differentiation was tracked for 3 days using time-lapse video recording. Cells were put in to a videomicroscope (Zeiss AxioObserver 7, provided by ICM-quant and CELIS facilities) with a humidified incubator at 37°C with a constant 5% CO2 supply. Images for both FITC and bright field were acquired every 10 min.
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7

Exosome Isolation from Neural Stem Cells

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Exosomes were isolated from the culture medium of NSCs as previously described.30 Briefly, NSCs were plated in poly‐l‐ornithine‐coated (100 μg/mL, Sigma, P4957) dishes and cultured in NSC medium (DMEM/F12, HyClone, SH30023) for 48 h. The culture supernatant was collected, Total Exosome Isolation reagent (Invitrogen, 4,478,359) was added, and the sample was filtered through a 0.22‐μm strainer and centrifuged in a subultraspeed low‐temperature centrifuge at 100,000 g for 2 h. After that, the supernatant was discarded, and the pellets were resuspended in 1× PBS and preserved at −80°C for later use.
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8

Poly-L-Ornithine Coating Protocol

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White clear-bottom 96-well plates (Greiner Bio-One; 655098) and 8-well chamber slides (ibidi; 80826; growth area: 1cm2) were coated with 50 µl and 100 µl poly-l-ornithine (ready-to-use 0.1% (w/v) solution; Sigma; P4957) respectively. After 1 h incubation at room temperature, wells were washed three times with 100 µl sterile Milli-Q water and left to dry with an open lid for 1 h under UV irradiation in a sterile laminar flow hood. Culture dished were then wrapped with Parafilm and stored at 4 °C.
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9

Collagen Nerve Regeneration Scaffold with NSCs

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The collagen nerve regeneration scaffold, LOCS, was soaked in poly-l-ornithine solution (P4957, Sigma) and then in fibronectin (F0895, Sigma) for 2 h at 37°C. After three washes, LOCS were cut to 2-mm lengths and placed in bundles of four to create a LOCS beam graft. Then Apol8-overexpression NSCs were digested to single cells and a million cells were attached to each LOCS beam. After incubation for 24 h, the graft was transplanted into the SCI injury site.
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10

Scratch Wound Healing Assay

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GSCs were grown as monolayers in 12-well dishes coated with poly-l-ornithine (P4957, Sigma) and laminin (L2020, Sigma). A scratch was generated by running a P1000 sterile pipette tip across the confluent GSC culture. Respective media was added in each well and images were recorded over time using Incucyte S3 live analysis system (EssenBio).
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