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6 protocols using mouse anti tuj1

1

Fluorescence Immunohistochemistry for Neural Markers

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Sections were washed three times with 1× PBS and then incubated with primary antibodies at 4 °C overnight, after 1 h blocking by 5% normal goat serum (NGS, Sigma, Darmstadt, Germany) and 0.2% Triton X-100 (Sigma, Darmstadt, Germany). The sections were then incubated at room temperature for 2 h with fluorescence conjugated secondary antibodies (Invitrogen, Waltham, MA, USA) and washed with 0.01 M PBS (1×) 3 times before being observed under a confocal laser scanning microscope (Zeiss, LSM800, Jena, Germany). Fluorescence immunohistochemistry was performed by using the following primary antibodies: mouse anti-NF160 (Abcam, 1:400, Cambridge, UK), rabbit anti-NeuN (Abcam, 1:500, Cambridge, UK), chicken anti-Map2 (Abcam, 1:500, Cambridge, UK), rabbit anti-Gfap (Dako, 1:1000, Carpinteria, CA, USA), rabbit anti-Sox2 (Abcam, 1:200, Cambridge, UK), chicken anti-Gfap (Abcam, 1:1000, Cambridge, UK), guinea-pig anti-Iba1 (Synaptic Systems, 1:800, Göttingen, Germany), mouse anti-Tuj1 (R&D, 1:400, Minneapolis, MN, USA), and mouse anti Nestin (Abcam, 1:1000, Cambridge, UK).
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2

Immunofluorescence Staining of Modified Human Fibroblasts

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Immunofluorescence staining was performed as following. 5 × 104 modified human fibroblasts were planted on Matrigel-coated glass cover-slips the day before induction. Ten to 28 days after viral infection, cells were fixed for 20 min at room temperature in 4% paraformaldehyde in PBS, permeabilized for 30 min in PBS containing 0.2% Triton X-100 and 10% normal goat serum (NGS) and incubated overnight at 4 °C in PBS containing 10% NGS and primary antibodies. Then cells were washed three times with PBS and incubated for 2 h at room temperature with anti-rabbit or anti-mouse secondary antibodies Alexa Fluor-488 or Alexa Fluor-594 (1:500, Invitrogen). The images were acquired by immunofluorescence microscope or Zeiss LSM 510 META confocol microscope with ×40, 1.3 numerical aperture oil-immersion objective.
The following antibodies were used for the immunofluorescence studies: rabbit anti-MAP2 (Sigma-Aldrich, 1:200), mouse anti-Tuj1 (R&D Systems, 1:100), mouse anti-synaptotagmin 1 (Synaptic Systems, 1:100), rabbit anti-synapsin 1(Cell Signaling, 1:200), rabbit anti-synapsin (1:1,000, Millipore), Guinea pig anti-vGluT1 (1:5,000, Millipore), rabbit anti-GABA (1: 3,000, Sigma), mouse anti-peripherin (1:100, Millipore), mouse anti-tyrosine hydroxylase (1:8,000, Sigma), mouse anti-TUJ-1 (1:1,000, Covance) and rabbit anti-TUJ-1 (1:2,000, Covance).
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3

Immunolabeling of Cellular Markers in Tissue Sections

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Slides with sectioned spheroids were rehydrated and washed three times with PBST (PBS with 0.1% Triton X-100). The slides were then incubated in blocking solution containing 5% donkey serum for 1 h, followed by incubation with primary antibodies diluted with the blocking buffer overnight at 4 °C. Slides were washed three times in PBST for 10 min each and incubated with secondary antibodies diluted in blocking buffer for 1 h at room temperature, washed three more times for 10 min each, and cover slipped with ProLongTM Gold Antifade Mountant with DAPI (cat. P36931, ThermoFisher, Waltham, MA, USA).
The following antibodies were used: rabbit anti-CC3 (1:750, cat. 9661-s, Cell Signaling, Danvers, MA, USA); rat anti-GFAP (1:1000, cat. 13-0300, ThermoFisher); rat anti-CTIP (1:500, cat. ab18465, Abcam, Cambridge, UK); mouse anti-SATB2 (1:100, cat. ab51502, Abcam); rabbit anti-TBR1 (1:250, cat. Ab31940, Abcam); mouse anti-Ki67 (1:50, cat. 550609, BD Pharmingen, San Diego, CA, USA); rabbit anti-MAP2 (1:1000, cat. PA5-85755, Life Technologies); goat anti-Sox2 (cat. AF2018, R&D Systems) mouse anti-TUJ1 (1:250, cat. ab14545, Abcam); mouse anti-CC1 (1:150, cat. ab16794, Abcam) and 4G8 (1:1000, cat. 800701, Biolegend, San Diego, CA, USA) and PHF13 (1:200, cat. 829001, Biolegend). All secondary antibodies were Alexa Fluor conjugated (Life Technologies) and were used at the concentration 1:500.
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4

Neurite Length Quantification of Neurons

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Neurons were transfected with siRNA for 12 hours, and the medium was changed to remove the residual siRNA. After another 60 hours of culture, the neurons were then resuspended in 0.05% trypsin-ethylene diamine tetraacetic acid (Gibco, Grand Island, NY, USA) for 1 minute at 37°C and replanted to the dish. At 16 hours post-replant, cells were fixed with 4% paraformaldehyde for 0.5 hours at 22°C. After washing with phosphate-buffered saline and blocking with Immunofluorescence Blocking Buffer (Beyotime) for 1 hour at approximately 22°C, the cells were subjected to the primary antibodies of mouse anti-Tuj1 (1:500, R & D Systems, Emeryville, CA, USA, Cat# MAB1195, RRID: AB_357520) overnight at 4°C. After washing with phosphate-buffered saline three times for 10 minutes, cells were incubated with donkey anti-mouse Alexa Fluor-488 (1:500; Proteintech, Rosemont, IL, USA, Cat# SA00013-5, RRID: AB_2890971) for 2 hours at 22°C. After incubation, the cells were washed three times for 10 minutes with phosphate-buffered saline, followed by nucleus staining with Hoechst 33342 (1:2000; Cat# H432; Dojindo). Images were acquired by microscopy (Zeiss, Axio Imager M2m, Carl Zeiss, Oberkochen, Germany). We quantified the total length of newborn neurites (longer than its soma diameter) of each neuron using Neuron J software in ImageJ.
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5

Immunofluorescence Staining of Modified Human Fibroblasts

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ROCK1/2 and mTORC1 (Raptor) /C2 (Rictor) shRNAs were obtained from Millipore-Sigma. Western blotting analyses were performed to check the knockdown efficiency. Immunofluorescence staining was performed as follows: 5 × 104 modified human fibroblasts were planted on Matrigel-coated glass coverslips the day before induction. Cells were fixed for 20 min at room temperature in 4% paraformaldehyde in PBS, permeabilized for 30 min in PBS containing 0.2% Triton X-100 and 10% normal goat serum (NGS) and incubated overnight at 4 °C in PBS containing 10% NGS and primary antibodies. Cells were washed three times with PBS and incubated for 2 h at room temperature with anti-rabbit or anti-mouse secondary antibodies conjugated to Alexa Fluor-488 or Alexa Fluor-594 (1:500, Invitrogen). Images were acquired on immunofluorescence microscope or Zeiss LSM 510 META confocal microscope at 40× magnification and 1.3 numerical aperture oil-immersion objective.
The following antibodies were used for the immunofluorescence studies: rabbit anti-MAP2 (Millipore-Sigma, 1:200), mouse anti-Tuj1 (R&D Systems, 1:100), rabbit anti-synapsin 1 (Cell Signaling, 1:200), mouse anti-Tuj1 (1:1000, Covance) and rabbit anti-Tuj1 (1:2000, Covance).
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6

Antibody Validation for Cellular Imaging and WB

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Primary antibodies used for immunocytochemistry (ICC) and WB included mouse anti-aaTub (1:10,000; Sigma, St. Louis, MO, USA; Cat #T6793), rabbit anti-ARL13B antibody (1:5000; Proteintech, Rosemont, IL, USA; Cat #17711-1-AP), mouse anti-TUJ1 (1:2000; R&D Systems, Minneapolis, MN, USA; Cat #NL1195V), chicken anti-Ki-67 (1:5000; Encor, Gainesville, FL, USA; Cat# CPCA-Ki67), chicken anti-GFAP (1:1000; Encor, Gainesville, FL, USA; Cat# CPCA-GFAP), mouse anti-GAPDH (1:10,000; Encor, Gainesville, FL, USA; Cat# MCA-1D4), chicken anti-GFP (1:5000; Abcam, Cambridge, UK; #ab13970), rabbit anti-HDAC6 (1:1000; Sigma, St. Louis, MO, USA; Cat #H2287), rabbit anti-HDAC6 (1:1000; Cell Signaling, Danvers, MA, USA; Cat #7558S), mouse anti-KIF3A (BD Biosciences, San Jose, CA, USA; Cat #611508), and rabbit anti-PCM1 (1:1000; Bethyl Laboratories, Montgomery, TX, USA; Cat# A301-150A). ACY-1215 (APEXbio, Houston, TX, USA; Cat #A4083) and ACY-738 (MedChemExpress, Monmouth Junction, NJ, USA; Cat #1375465-91-0) were dissolved in 100% DMSO (Fisher Scientific, Waltham, MA, USA; Cat # D128-500) to produce a stock concentration of 10 mM. cDNA vectors pCMV-EGFP or pCMV-mycEGFP:HDAC6[#NM_001321225.2] were designed and obtained from Vectorbuilder (Vectorbuilder.com (accessed on 29 March 2021)).
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