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24 protocols using dulbecco s phosphate

1

Cryopreservation of Tissue-Engineered Bone Grafts

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After 5 weeks of culture in an osteogenic environment, the tissue‐engineered bone grafts were stored using two different preservation methods. Briefly, samples were washed in Dulbecco's phosphate‐buffered saline (DPBS; Gibco), placed in cryovials, and stored in DPBS (Gibco) at 4 °C or in Synth‐a‐Freeze at −80 °C for 48 hours. For storage in Synth‐a‐Freeze at −80 °C, cryovials were placed in a Nalgene® Mr. Frosty container to provide a critical 1 °C/min cooling rate required for optimal cryopreservation of cells. At the end of the preservation period, samples were rapidly revitalized in a water bath at 37 °C and then incubated in osteogenic medium for 1 and 24 h before analysis. Nonpreserved samples were used as controls for all analyses.
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2

Quantitative ACE ELISA Protocol

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Serum ACE levels were determined by a commercial human ACE ELISA (R&D Systems) as described previously (15 (link), 29 (link)). ELISA plates (Greiner Bio-One) were coated with 80 ng/well capture antibody. The remaining binding sites were blocked using reagent diluent [10 mg/mL bovine serum albumin (Sigma-Aldrich) in Dulbecco’s phosphate buffered saline solution (PBS, Gibco)]. Diluted sera (100x) were added to the wells, and the antibody–antigen complexes were labeled by a biotinylated detection antibody (20 ng/well). Diluted (200x) streptavidin-conjugated horseradish-peroxidase was then added to the wells. Finally, the amounts of complexes were detected with a substrate solution containing 0.3 mg/mL tetramethylbenzidine, 0.1 mM H2O2 and 50 mM acetic acid. This reaction was terminated after 20 min by the addition of 0.5 M HCl, and the optical density (OD) was determined at 450 nm using a fluorescence microplate reader in absorbance mode (Clariostar; BMG Labtech GmbH, Offenburg, Germany). ACE levels are expressed as ng/mL.
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3

Phagocytosis Ability by Flow Cytometry

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Phagocytosis ability was assessed by flow cytometry using pHrodo green E.coli bioparticles®, following the protocol recommended by the manufacturer. Briefly, 100,000 cells (1,000,000/mL) per well were cultivated in a 96-well plate. They were activated for 24 h as M1 in the presence or absence of bDMARD. Then, culture medium was replaced by 100 μL of pHrodo bioparticles resuspended in Dulbecco's phosphate-buffered saline (DPBS, Gibco), and incubated for 90 min at 37°C/5% CO2. Cells were then harvested after 10 min of incubation on ice in cold DPBS and assessed by flow cytometry (MACSQuant Q10). In some experiments, inhibition of CD16-dependent phagocytosis was performed during the activation phase, with a LEAF purified anti-human CD16 antibody (clone 3G8, BioLegend) used at 10 μg/ml. All conditions were performed in duplicate.
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4

Fluorescence Microscopy of Antibiotic-Treated Cells

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Cultures were grown in the absence or presence of 12.5 μM ciprofloxacin as described above. After 8 h, 80 μL of the culture was added to 320 μL fresh media, allowed to cool to room temperature, and then 1 mL 4% paraformaldehyde in Dulbecco’s phosphate buffered saline (PBS, 137 mM NaCl, 2.7 mM KCl, 8 mM Na2HPO4, 2 mM KH2PO4; Gibco, 14190–144) was added and incubated 10 min at room temperature. The suspension was centrifuged at 1,000 × g at 4°C for 5 min and the supernatant removed. Cells were washed twice with 1 mL PBS. The final cell pellet was re-suspended in 150 μL PBS, and then 5 μL of the suspension was placed on a thin 1% (w/v) agar pad on a microscope slide. ProLong Gold (Invitrogen, P369931) mounting agent was added to the agar pad, capped with a cover slip, and the slides were allowed to cure overnight at room temperature. Slides were imaged on a Leica DMi8 by DIC microscopy with a 63×/NA 1.4 oil immersion objective. Fields with minimally overlapping bacteria were identified and stitched images of 3×3 panels acquired.
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5

Synthesis and Characterization of GelMA Hydrogel

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Gelatin methacryloyl hydrogel (GelMA) was prepared by reaction of type A gelatin (porcine skin, ref. G2500, Sigma Aldrich) with methacrylic anhydride (ref. 276685, Sigma Aldrich) at 57°C for 3 h, as previously described.34 (link) Briefly, gelatin was dissolved at a 10% w/v in Dulbecco’s phosphate buffered saline (DPBS, Gibco) after which 0.6 g methacrylic anhydride (per gram of gelatin) was added dropwise to achieve an ∼80% degree of modification. Removal of any non-reacted molecule was achieved through dialysis of the functionalized polymer against distilled water at 53°C for 1 week. Water bath was changed every day. Solution was filtered, freeze-dried and subsequently stored at 4°C before use. The degree of functionalization was determined via 1H NMR spectroscopy. The spectra were collected with a 400 MHz Bruker Avance NEO. Briefly, 18 mg of the samples were dissolved in 500 L of D2O. After that, the solution was transferred to an NMR tube for analysis. The control samples were treated in the same way.
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6

Cell Isolation from Tissue Sheets

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PD sheets and TKA sheets were washed in Dulbecco’s phosphate-buffered saline (DPBS; Gibco). The sheets were then incubated in TripLE Express® (Gibco) at 37 °C for 15 min and centrifuged at 1500 rpm for 5 min. The cell sheets were resuspended in 0.25 mg/mL Collagenase P (Roche, Basel, Switzerland) at 37 °C for up to 30 min and then centrifuged at 1500 rpm for 5 min. The isolated cells were finally resuspended in DMEM/F12, and cell count and viability were determined using the trypan blue exclusion assay.
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7

Multipotency and Pluripotency Markers in PDMSCs

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The effect of maternal age on the expression of multipotency and pluripotency markers in PDMSCs was analyzed by flow cytometry. PDMSCs were washed with Dulbecco’s phosphate-buffered saline (DPBS, Gibco) and resuspended in fluorescence activated cell sorting (FACS) buffer (Thermo Fisher Scientific) with FITC-conjugated anti-human CD90, PE-conjugated anti-human CD73, and APC-conjugated anti-human CD105 (BioLegend, CA, USA) for 20 minutes at room temperature in the dark. The cells were then washed with FACS buffer and resuspended in fixation buffer (Thermo Fisher Scientific). For intracellular staining, the cell membrane was permeabilized with 1x Perm buffer (BioLegend) for 20 minutes at room temperature. The cells were resuspended in 1x Perm buffer with PE-conjugated anti-human OCT4, FITC-conjugated anti-human SSEA4 and Alexa Fluor® 647-conjugated anti-NANOG antibodies for 2 hours in the dark. The cells were then washed and resuspended in fixation buffer. The fluorescence intensity of 20,000 cells was recorded on a flow cytometer (Guava, Merck) and analyzed using FlowJo software with excitation/emission wavelengths 494/520 for FITC, 496/578 for PE, 650/660 for APC and 650/660 for Alexa Fluor® 647.
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8

Bacterial Adherence to Plasma Proteins

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Bacteria were grown in BaLi medium and washed twice with Dulbecco's phosphate-buffered saline (DPBS; Gibco). Bacterial binding to purified plasma, cellular, and Rn Fn was performed using 5 × 108 bacteria (optical density [OD]; 1.0 OD = 5 × 108 cells/mL) and 7.5 μg Fn in DPBS. For cross-linking analysis, samples were incubated for 30 min at 37°C while gently shaking. For competition binding experiments, 0.5 or 5 μg/μL heparin were added and incubated at 37°C for 2 h while shaking. After each incubation step, cells were centrifuged and washed three times with DPBS.
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9

Isolation of Cells from Tissue Sheets

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PD sheets were washed in Dulbecco’s phosphate-buffered saline (DPBS; Gibco). The sheets were then incubated in TripLE Express® (Gibco) at 37 °C for 15 min and centrifuged at 1500 rpm for 5 min. The cell sheets were resuspended in 0.25 mg/mL collagenase P (Roche, Basel, Switzerland) at 37 °C for up to 30 min and then centrifuged at 1500 rpm for 5 min. The isolated cells were finally resuspended in DMEM/F12, and the cell count and viability were determined using the trypan blue exclusion assay.
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10

Isolation of Adherent Cells from Tissue Sheets

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The cell sheets were washed in Dulbecco's phosphate-buffered saline (PBS; Gibco). The sheets were then incubated in TripLE Express® (Gibco) at 37 °C for 40 min and centrifuged at 1500 rpm for 5 min. The cell sheets were resuspended in 0.25 mg/ml collagenase P (Roche, Basel, Switzerland) at 37 °C for up to 5 min and then centrifuged at 1500 rpm for 5 min. Finally, the isolated cells were resuspended in DMEM/F12, and the cells were counted using a trypan blue exclusion assay.
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