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12 protocols using enhanced chemiluminescence reagent

1

Western Blot Analysis of Oxidative Stress

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Western blotting and the analysis of the blot results was conducted as previously reported27 (link). In brief, cells were lysed and centrifuged at 12,000 g for 10 minutes at 4 °C. The supernatants were denatured at 100 °C for 5 minutes and mixed with a 1/5 volume (corresponding to the volume of the supernatants) of loading buffer (Beyotime, China). Then, 30-µg protein samples were loaded into each well in a 10% SDS-polyacrylamide gel and were subjected to electrophoresis. Once the proteins of diverse molecular weights were sufficiently separated, the proteins were transferred to PVDF membranes (Millipore, USA). Next, the PVDF membranes with the transferred proteins were blocked with 5% nonfat milk diluted in TBST for 2 hours at 25 °C and were then incubated with primary antibodies, such as SLC7A11, SLC3A2, GPX4, GSS, GCLC, ACSL4 (Cell Signaling Technology, USA) and β-actin (Beyotime, Shanghai, China), with dilutions of 1:1500, 1:2000, 1:2000, 1:2500, 1:3000 and 1:10,000, respectively, at 4 °C for 12 hours. Next, the membrane was washed again with TBST and was incubated with a 1:10,000 dilution of horseradish peroxidase (HRP)-labelled anti-rabbit IgG (Beyotime, Shanghai, China) for 1 hour at 25 °C. Finally, the respective protein bands were visualized using enhanced chemiluminescence reagents (BOSTER, Wuhan, China).
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2

Western Blot Analysis of FBXO32

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Cells were harvested and lysed using immunoprecipitation assay buffer containing protease inhibitors and phosphatase inhibitors for 30 min on ice. Protein concentrations of the cell lysates were determined by the BCA method (Beyotime). The proteins were placed on 10% gradient gels and then separated by SDS-PAGE (Bio-Rad, Hercules, CA). Resolved proteins were electrophoretically transferred onto PVDF membranes (Invitrogen) and then blocked for 1 h at room temperature with 5% non-fat dry milk in TBST containing 0.1% Tween 20. The membranes were probed with rabbit anti-GAPDH (mAb) (1: 1000) or rabbit anti-FBXO32 monoclonal antibody (mAb) (1: 1000) overnight at 4°C. Then, they were washed with 1×TBST and incubated in secondary antibodies diluted 1: 2000 that were conjugated to horseradish peroxidase (Santa Cruz, USA) for 2 h at room temperature with enhanced chemiluminescence reagents to detect the proteins (Boster, Wuhan, China). The membrane protein bands were imaged using X-film (Kodak Co.) and scanned. All Western blots were performed 3 times at least.
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3

Western Blotting Protein Expression Analysis

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We used western blotting to detect the protein expression of target genes. Radio immunoprecipitation assay buffer mixture (Beyotime, P0013B, China) containing a protease inhibitor cocktail (Beyotime, P1006, China) was used to extract whole-cell lysates. The concentrations of these whole-cell lysates were determined using BCA protein assay kit (Beyotime, P0012, China). The whole-cell lysates from the samples were then separated via sodium dodecyl sulfate–polyacrylamide gel electrophoresis for 2 h. The proteins were transferred to 0.45-μm polyvinylidene difluoride (PVDF) membranes (Pierce Biotechnology, USA) at 400 mA for 20–40 min, wherein the timing depended on the size (kDa) of the target protein. After blocking with 5% skim milk powder in Tris-buffered saline with Tween™ (TBST) for 1 h at room temperature, the PVDF membranes were incubated with specific primary antibodies overnight at 4 °C. After washing with TBST three times, the membranes were incubated with horseradish peroxidase-conjugated secondary antibody (BOSTER, China) for 1 h. Finally, after treatment with enhanced chemiluminescence reagents (BOSTER, China), the images of the membranes were captured using the ChemiDoc XRS imaging system (Bio-Rad, USA).
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4

Western Blot Analysis of STIM1 and ORAI1

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Western blot analysis was performed as previously described in detail [20 (link)]. Simply, cells were lysed and centrifugated at 12,000g for 10 min at 4 °C. The supernatants were loaded in each well and subjected to 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to PVDF membrane (Millipore, USA). Next, 5% nonfat milk was used to block the PVDF membrane in washing buffer for 2 h at room temperature and then incubated with primary antibody including STIM1, ORAI1 and β-actin (Biosharp, China) with diverse diluted ratio (1:1500, 1:2000 and 1:10,000) at 4 °C overnight. On the following day, washing PVDF membrane with TBST-T and incubate with 1:10,000 dilution of horseradish peroxidase HRP-labeled anti-rabbit IgG (Beyotime, China) for 1 h at room temperature. Finally each protein bands were visualized using enhanced chemiluminescence reagents (BOSTER, Wuhan, China).
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5

Western Blot Analysis of PDGFD

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Using a radioimmunoprecipitation assay buffer lysis buffer mixture, containing protease inhibitors, lyse AGS, MKN45, and GES-1 cells, we collected the lysates. Further, we loaded the 30–50 μg of total proteins into a sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) system and then transferred it onto a polyvinylidene fluoride membrane by electrophoresis. The membranes were blocked with 5% nonfat dried milk powder dissolved in tris-buffered saline Tween-20 buffer for 1 hour at room temperature. Primary antibodies against rabbit anti-PDGFD (sc-137030,1: 1000, Santa Cruz) and rabbit anti-α-tubulin (sc-8035, 1: 1000, Santa Cruz) were added at 4°C and incubated overnight, followed by a 1-hour incubation at room temperature with a secondary antibody against goat anti-rabbit immunoglobulin G (IgG) (ab6721, 1: 20000, Abcam). The protein bands were detected using enhanced chemiluminescence reagents (Boster Biological Technology, Wuhan, China). Finally, the gray values of protein bands were processed using ImageJ analysis software (NIH, Bethesda, MA, USA).
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6

Western Blot Protein Expression Analysis

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Cells were seeded and incubated in 6-well plates and treated with above dosage and time and washed with ice-cold PBS and then suspended in 150 μl of RIPA lysis buffer (Beyotime, Shanghai, China). The protein concentration was determined using the BCA assay kit (Beyotime, Shanghai, China). An equal amount of proteins was added into each lane. Proteins were separated using 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes. After the membranes were blocked with 5% skim milk for 2 h, the membranes were incubated with the primary antibody overnight at 4 °C, washed with Tris-buffered saline-Tween solution (TBST) 3 times and incubated with a 1:1000 dilution of horseradish peroxidase (HRP)-labeled goat anti-rabbit IgG (Beyotime, Shanghai, China) for 1 h. Finally, bands were detected using enhanced chemiluminescence reagents (BOSTER, Wuhan, China).
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7

Western Blot Analysis of AhR Protein

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The procedure of Western blot was conducted as previously described (Wang et al., 2021 (link)). Briefly, suitably sized lung tissues were homogenized and lysed by lysis buffer (Beyotime) containing 0.5 mM protease inhibitor PMSF (Beyotime). The mixture was centrifuged at 13,000 g for 20 min at 4°C and the supernatant was the total protein. After denaturation, protein was separated by SDS-PAGE (8%–12%) and transferred to nitrocellulose membrane (Beyotime). The membrane was blocked with QuickBlock Blocking Buffer (Beyotime) for 15 min and incubated with specific primary antibodies for 4 h at room temperature. The membrane was washed at least 3 times with Tris-buffered saline with 1% Tween 20 (TBST) (Boster, Wuhan, China) and incubated with secondary goat anti-rabbit IgG (BA1056, Boster, Wuhan, China) for 45 min at room temperature. The blot was detected by enhanced chemiluminescence reagent (Boster, Wuhan, China) and analyzed by Image J (version 1.4.3.67) software. The primary antibodies used are as follows: AhR (28727-1-AP, Proteintech, Wuhan, China) and β-actin (bs-0061R, Bioss, Beijing, China).
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8

Western Blot Analysis of Cell Signaling

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The primary antibodies used in this study were IG2BP2 (11601–1-AP; ProteinTech Group, Inc), Phospho-Akt (Ser473) (#4060, CST), GAPDH (#5174, CST), Akt (#4691, CST), cleaved PARP (#5625, CST), cleaved caspase-3 (#9664, CST), CDK2 (#2546, CST), p21 Waf1/Cip1 (#2947, CST) and Cyclin D1 (#2978, CST). The secondary antibodies and enhanced chemiluminescence reagent were purchased from Boster (Wuhan, China). The protein extraction and western blot analysis were performed as described in our previous study [5 (link)].
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9

Quantitative Analysis of Epithelial-Mesenchymal Markers

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Total proteins in the cells were extracted and quantified using the bicinchoninic acid method. The samples (30 μg) were then added to each line of 10% SDS-PAGE gel (Boster, Wuhan, China) to separate and then transferred to PVDF membranes (Millipore, USA). After incubation with 5% BSA, the members were incubated with primary antibodies to CHST12 (dilution 1:1000; catalog number: 15,341-1-AP; Proteintech, Wuhan, China), β-catenin (dilution 1:1000; catalog number: 17,565-1-AP; Proteintech, Wuhan, China), E-cadherin (dilution 1:1000; catalog number: 20,874-1-AP; Proteintech, Wuhan, China), N-cadherin (dilution 1:1000; catalog number: 22,018-1-AP; Proteintech, Wuhan, China), and GAPDH (dilution 2:1000; catalog number: 60,004-1-Ig; Proteintech, Wuhan, China) overnight at 4°C. After incubation with HRP-conjugated secondary antibodies for 2 h at room temperature, the signal was developed using an enhanced chemiluminescence reagent (Boster, Wuhan, China). GAPDH was used as a loading control to determine the relative expression levels of CHST12, β-catenin, E-cadherin, and N-cadherin.
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10

Quantifying Hepatic TLR4 and NF-κB Proteins

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Total protein from hepatic tissue was extracted from cell lysate using TRIzol reagent (Invitrogen-Life Technologies, Carlsbad, CA, USA). Protein concentration was determined by Coomassie Brilliant Blue Staining method. Protein (20 µg) was loaded and resolved using a 10% SDS-PAGE and transferred to a nitrocellulose membrane. The membrane was blocked with 5% non-fat skim milk at room temperature (25°C). The membrane was then incubated with primary antibodies such as rabbit anti-human TLR4 polyclonal antibody and goat anti-rat NF-κB (dilution 1:500) for 12 h. Subsequently, horseradish peroxidase conjugated rabbit anti-goat IgG (dilution 1:1,000) was added and the membrane was incubated for 1 h at room temperature. Enhanced chemiluminescence reagent (Boster Biological Technology, Ltd., Wuhan, China) was used to detect hybridization signal and Quantity One® software (Bio-Rad Laboratories, Inc., Hercules, CA, USA) was used to analyze the relative amount of TLR4 and NF-κB proteins. β-actin served as the internal reference.
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