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13 protocols using s1620

1

Culturing and Stimulating Primary Bone Marrow-Derived Macrophages

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Primary BMDMs were grown for 6 d in IMDM (12440-053; Thermo Fisher Scientific) supplemented with 10% FBS (S1620; BioWest), 30% L929-conditioned media, 1× nonessential amino acids (11140050; Gibco), and 1× penicillin-streptomycin (15070063; Thermo Fisher Scientific) (Tweedell et al, 2020 (link)). BMDMs were seeded in DMEM (11995-073; Thermo Fisher Scientific) containing 10% FBS and 1× penicillin-streptomycin at a concentration of 1 × 106 cells (12-well plates, for immunoblot analysis) or 5 × 105 cells (24-well plates, for IncuCyte cell death analysis) and incubated overnight. Cells were then washed, cultured, and stimulated in DMEM with 10% FBS.
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Differentiation and Cultivation of Primary and THP-1 Macrophages

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Primary bone marrow-derived macrophages (BMDMs) were cultivated for 6 days in DMEM (Thermo Fisher Scientific, 12440–053) supplemented with 10% FBS (Biowest, S1620), 30% L929-conditioned media, 1% non-essential amino acids (Thermo Fisher Scientific, 11140–050) and 1% penicillin and streptomycin (Thermo Fisher Scientific, 15070–063). BMDMs were then seeded into 12-well plates at a density of 1 million cells per well and incubated overnight before use. THP-1 cells (ATCC® TIB-202™) were grown in RPMI 1640 with 10% FBS and differentiated into macrophages in RPMI 1640 medium containing 20% FBS and 100 ng/ml PMA for 2 days. The THP-1 cell line was purchased directly from ATCC and was not further authenticated in our lab. Cells were tested for mycoplasma contamination using mycoplasma detection PCR and were found to be negative for mycoplasma contamination.
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3

Generating Fibroblasts and HEK293T Cells with POT1 Variants

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Patient-derived skin fibroblasts were obtained from a skin punch biopsy and grown in NUT.MIX.F-12(HAM) w/Glutamax (HAMF-12), supplemented with 10% FBS and penicillin/streptomycin (15140122; Gibco). They were cultured in DMEM (10-013-CV; Corning) supplemented with 1× penicillin/streptomycin (15140122; Gibco) and 10% heat-inactivated FBS (S1620; Biowest) at 37°C and 5% CO2. HEK293T were selected with shRNAs targeting POT1 as in our previous publication (Rice et al., 2017 (link)). These cells were then introduced with Flag-POT1(WT) or FlagPOT1(L259S) using pLU iBLAST vectors. Cells were selected using growth medium supplemented with 5 μg/ml blasticidin S and 2 μg/ml puromycin.
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Culturing Primary Bone Marrow-Derived Macrophages

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Primary BMDMs were cultivated for 6 days at 37°C in IMDM (Thermo Fisher Scientific, 11995-073) supplemented with 10% FBS (Biowest, S1620), 30% L929-conditioned medium, 1% non-essential amino acids (Thermo Fisher Scientific, 11140-050), and 1% penicillin and streptomycin (Thermo Fisher Scientific, 15070-063). BMDMs were then seeded into 12-well plates with antibiotic-free medium at a density of 1 × 106 cells per well and incubated overnight before stimulation or infection.
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5

Human Dermal Fibroblast Cell Culture

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Single donor human dermal fibroblasts were purchased from Zenbio (DF-F) at passage 2. Fibroblasts were grown in DMEM (Corning 10–013-CM) with 10% FBS (Biowest S1620) plus PSQA and used in experiments at passages 3–8.
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6

Generating Primary Bone Marrow-Derived Macrophages

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Primary bone marrow-derived macrophages (BMDMs) were grown for 6 days in Iscove’s modified Dulbecco’s medium (IMDM) (12440053, Thermo Fisher Scientific, Waltham, MA) supplemented with 10% fetal bovine serum (FBS) (TMS-013-B, Millipore, Billerica, MA or S1620, BioWest, Riverside, MO), 30% L929-conditioned medium, and 1× penicillin-streptomycin (15070063, Thermo Fisher Scientific). BMDMs were seeded at a concentration of 1 × 106 cells onto 12-well plates or 1 × 105 cells onto 96-well plates and incubated overnight. Cells were washed and cultured in antibiotic-free Dulbecco’s modified Eagle medium (DMEM) (11995065, Thermo Fisher Scientific, Waltham, MA) with 10% FBS before stimulations or infections.
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7

Differentiation and Stimulation of Bone Marrow-Derived Macrophages

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Primary BMDMs were grown for 6 days in IMDM (12440–053, Gibco) supplemented with 10% FBS (S1620, lot number 221C16, Biowest), 30% L929-conditioned medium and 1% penicillin and streptomycin. BMDMs (1 × 106) were seeded in 12-well cell culture plates (3513, Costar) in DMEM (11995–065, Gibco) supplemented with 10% FBS and 1% penicillin–streptomycin before stimulation with ligands. For infection granulocyte macrophage colony-stimulating factor (GM-CSF)–derived bone marrow cells (denoted as BMDMs) were prepared as previously described and infected with A. fumigatus conidia at a multiplicity of infection (MOI) of 10 for 18 h. For priming, BMDMs were incubated with 100 ng/mL of LPS (tlrl-smlps, Invivogen) for 3 h and washed before infecting with A. fumigatus as described above.
For stimulation with translation inhibitors, BMDMs were incubated with 1 μg/mL of Pam3CSK4 (tlrl-pms, Invivogen) for 4 h, washed, and incubated with 25 μg/mL of anisomycin (11308, Cayman Chemical), 50 μg/mL of cycloheximide (01810, Sigma-Aldrich) or 50 μg/mL of puromycin (ant-pr-1, Invivogen).
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8

Differentiation and Stimulation of Bone Marrow-Derived Macrophages

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Primary BMDMs were grown for 6 days in IMDM (12440–053, Gibco) supplemented with 10% FBS (S1620, lot number 221C16, Biowest), 30% L929-conditioned medium and 1% penicillin and streptomycin. BMDMs (1 × 106) were seeded in 12-well cell culture plates (3513, Costar) in DMEM (11995–065, Gibco) supplemented with 10% FBS and 1% penicillin–streptomycin before stimulation with ligands. For infection granulocyte macrophage colony-stimulating factor (GM-CSF)–derived bone marrow cells (denoted as BMDMs) were prepared as previously described and infected with A. fumigatus conidia at a multiplicity of infection (MOI) of 10 for 18 h. For priming, BMDMs were incubated with 100 ng/mL of LPS (tlrl-smlps, Invivogen) for 3 h and washed before infecting with A. fumigatus as described above.
For stimulation with translation inhibitors, BMDMs were incubated with 1 μg/mL of Pam3CSK4 (tlrl-pms, Invivogen) for 4 h, washed, and incubated with 25 μg/mL of anisomycin (11308, Cayman Chemical), 50 μg/mL of cycloheximide (01810, Sigma-Aldrich) or 50 μg/mL of puromycin (ant-pr-1, Invivogen).
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9

Primary BMDM Culture and Seeding

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Primary BMDMs were cultured for 6 days in Iscove's modified Dulbecco's medium (Thermo Fisher Scientific, 12440-053) supplemented with 10% FBS (Biowest, S1620), 30% L929-conditioned medium, 1% nonessential amino acids (Thermo Fisher Scientific, 11140-050), and 1% penicillin and streptomycin (Thermo Fisher Scientific, 15070-063). Then BMDMs were seeded into 12-well plates at a density of 1 million cells/well and incubated overnight before use.
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10

Measuring IFNβ secretion from cells

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BMDM medium was replaced with DMEM containing 10% FBS (Biowest, S1620) and 1% penicillin and streptomycin 24 h before supernatant collection. Then, the supernatant was used to measure IFNβ by ELISA (BioLegend, #439407) according to the manufacturer’s instruction.
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