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5 protocols using ax10 imager a1 microscope

1

Immunohistochemical Analysis of Tongue Cancer

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Immunohistochemical analysis was performed to investigate the expression of HMGA2, Snail, E-cadherin and Vimentin in different grades of human tongue cancer. Briefly, immunohistochemistry (IHC) was performed on the paraffin-embedded human tongue cancer tissue sections. Antigen retrieval was performed in a pressure cooker in citrate solution, pH 6.0, for 15 min, followed by treatment with 3 % hydrogen peroxide for 5 min. Specimens were incubated with antibodies as followed: goat monoclonal antibodies against HMGA2 (1:100, CST), E-cadherin, vimentin, snail (1:100, Santa Cruz, Santa Cruz, CA, USA). For the negative controls, isotype-matched antibodies were applied. The tissue sections were observed under a Zeiss AX10-Imager A1 microscope (Carl Zeiss, Thornwood, NY) and all images were captured using AxioVision 4.7 microscopy software (Carl Zeiss, Thornwood, NY).
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TUNEL Assay for Apoptosis Detection

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This assay was performed using the In Situ Cell Death Detection kit (Roche). Apoptotic cells were also visualized by the terminal deoxytransferase-mediated dUTP-biotin nick end labeling (TUNEL) method. Cells were fixed with 4% paraformaldehyde for 15 min at room temperature, and made permeable with 25 µg/mL of proteinase K for 30 min at 37°C before being incubated with a 1:9 mixture of enzyme solution and labeling solution at 37°C for 2 h. They were washed three times with PBST for 5 min and incubated with peroxidase at 37°C for 30 min. Subsequently, the slides were incubated with 50 µL DAB substrate at room temperature for 10 min. After being washed three times with 1 × TBS, the cells were stained with hematoxylin. The TUNEL-positive cells showed orange-brown nuclei under light ZEISS AX10-Imager A1 microscope.
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Microglial Immunofluorescence Staining and Imaging

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Microglial cells, plated onto poly-D-lysine-coated cover slips, were fixed with paraformaldehyde (PFA) (4%; 30 min), washed and blocked by incubation with 10% NHS and 0.1% Triton X-100 for 1 h and incubated at 4 °C with the primary antibodies anti-Iba1 (Wako, Japan 1:1000), anti-Aβ 6E10 (Biolegend, USA, 1:500), anti-LAMP1 (Abcam, UK, 1:250) and anti-Arginase (Arg)1 (Santa Cruz, USA, 1:500) followed by the secondary antibodies Alexa Fluor® 594 donkey anti-rabbit IgG (1:1000), Alexa Fluor® 488 donkey anti-mouse IgG (1:1000) and Alexa Fluor® 633 donkey anti-goat IgG (1:1000) and mounted in ProLong®Gold with the nuclear marker 4′,6-Diamidine-2′-phenylindole dihydrochloride (DAPI; Thermo Scientific, USA). Images (10 fields per experiment, triplicate analysis; × 40 magnification) were acquired with a Zeiss AX10 Imager A1 microscope. Analysis of images was undertaken with ImageJ software; the number of Aβ+ microglia was assessed. Control experiments with each secondary antibody, alone or in combination, were included and images were acquired sequentially on a Leica SP8 scanning confocal microscope for each fluorophore to eliminate cross-signal contamination. Analysis revealed that anti-TLR2 antibody staining of Iba1+ cells was confined to the membrane (see Additional file 1: Figure S2).
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Phagocytic Capacity of Microglia

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Uptake of latex beads (1.0 μm mean particle size; L4655, Sigma-Aldrich, Ireland) in a fluorescent yellow-green aqueous suspension was used to analyse phagocytic capacity in microglia isolated from young and aged mice. Cells, prepared as described above, were incubated (4 h) with 0.025% latex beads in fresh cDMEM media. Cells were washed, fixed in 4% PFA, and washed in PBT (PBS + 1% Triton X-100) prior to staining. Cells were blocked (1 h; PBT + 3% BSA), incubated with rabbit anti-Iba1 (19–7141, Wako, Japan 1:1000; overnight; 4 °C), washed, incubated with Alexa Fluor® 546 donkey anti-rabbit IgG (1:1000; 2 h; room temperature, A10040, Invitrogen, USA), and mounted in ProLong Gold with DAPI (P36941, Thermo Scientific, USA). Images (8 fields; 40 × magnification) were acquired with a Zeiss AX10 Imager A1 microscope. Analysis of images was undertaken with the ImageJ software, and the number of latex beads+ microglia was assessed.
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5

Visualizing Yeast Membrane Proteins

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Single colonies of UCD932 [gar] and [GAR+], UCD932 Hxt3-GFP [gar] and [GAR+], and UCCT 1405 Pma1:m:Neon:KanMX [gar] and [GAR+] were inoculated into 10 mL of YPD liquid and grown overnight on a rotary drum at 25 °C. Cultures were reinoculated and grown until mid-log phase/exponential phase (∼0.4A600 nm). Stationary cells were taken from the original overnight cultures (∼1A600 nm). Wet mounts were prepared and photographed with the Carl Zeiss AX10 Imager. A1 Microscope (Carl Zeiss, Oberkochen, Germany), Zeiss EX Plan-NEOFLUAR 100X oil immersion lens, with the Zeiss 38 HE Filterset (Ex:440/Em:550). Images were exported in the.tiff format using the Zeiss AxioVision acquisition software version 4.8 from Carl Zeiss. Similar exposure times were used for all images being compared.
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