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3 protocols using fibronectin sirna

1

Integrin and Fibronectin Knockdown Assay

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Cells were plated and left to grow overnight in 5% FBS/RPMI. 5%FBS/RPMI media was replaced with Opti-MEM (Invitrogen). Fibronectin pool, Fibronectin siRNA A GACUGGUGGUUACAUGUUAtt, Fibronectin siRNA B CGCAUCACUUGCACUUCUAtt, Fibronectin siRNA C GAUCCUGUCUACUUCACAAtt, Integrin α5 siRNA A GUCAGAAUUUCGAGACAAAtt, Integrin α5 siRNA B CCACUGACCAGAACUAGAAtt, Integrin β1 siRNA A GAGAUGAGGUUCAAUUUGAtt, Integrin β1 siRNA B GAUGAGGUUCAAUUUGAAAtt, (25nM, Santa Cruz), Integrin α5, Integrin β1, and PTEN (all 25nM, Cell Signaling Technologies), and BRAF (25nM, Thermo Scientific) siRNAs in complex with Lipofectamine 2000 (Invitrogen) were added. Scrambled, non-targeting siRNAs were used as controls. A final concentration of 5% FBS in RPMI was added the next day. For fibronectin knockdowns, final concentration 1% FBS in RPMI was added next day. Cells were transfected for 24-72 hours prior to treatment.
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2

Integrin and Fibronectin Knockdown Assay

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Cells were plated and left to grow overnight in 5% FBS/RPMI. 5%FBS/RPMI media was replaced with Opti-MEM (Invitrogen). Fibronectin pool, Fibronectin siRNA A GACUGGUGGUUACAUGUUAtt, Fibronectin siRNA B CGCAUCACUUGCACUUCUAtt, Fibronectin siRNA C GAUCCUGUCUACUUCACAAtt, Integrin α5 siRNA A GUCAGAAUUUCGAGACAAAtt, Integrin α5 siRNA B CCACUGACCAGAACUAGAAtt, Integrin β1 siRNA A GAGAUGAGGUUCAAUUUGAtt, Integrin β1 siRNA B GAUGAGGUUCAAUUUGAAAtt, (25nM, Santa Cruz), Integrin α5, Integrin β1, and PTEN (all 25nM, Cell Signaling Technologies), and BRAF (25nM, Thermo Scientific) siRNAs in complex with Lipofectamine 2000 (Invitrogen) were added. Scrambled, non-targeting siRNAs were used as controls. A final concentration of 5% FBS in RPMI was added the next day. For fibronectin knockdowns, final concentration 1% FBS in RPMI was added next day. Cells were transfected for 24-72 hours prior to treatment.
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3

Fibronectin Silencing in Cell Cultures

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Cells were grown in 6-well plates. When a confluency of 60–70% was reached, the cells were transfected according to the manufacturer’s instructions. Briefly, the cells were transfected with 10 nM of either fibronectin siRNA (Santa Cruz Biotechnology, TX, USA, cat#: sc-29315) or a non-targeting scramble control (Sigma, St.Louis, MO, USA) using Lipofectamine RNAiMAX (Thermo Fisher Scientific Inc.; Wilmington, DE, USA) diluted in Opti-MEM (ThermoFisher Scientific Inc.; Wilmington, DE, USA). The cells were then incubated for 24 h at 37 °C after which cells were harvested.
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