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Topspin software package version 3

Manufactured by Bruker
Sourced in Germany

TopSpin software package version 3.0 is a data acquisition and processing software for nuclear magnetic resonance (NMR) spectroscopy. It provides a comprehensive suite of tools for the control and management of Bruker NMR spectrometers and the analysis of NMR data.

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3 protocols using topspin software package version 3

1

NMR Spectroscopy of Molecular Samples

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All spectra were recorded using a Bruker AMX-600 NMR spectrometer operated at a 600.13 MHz 1H resonance frequency (Bruker Biospin, Rheinstetten, Germany). Quality control tests were performed at the beginning of each measurement day. A representative sample was used for NMR probe tuning and matching, determination of the transmitter offset value for water pulse presaturation and 90 pulse adjustments. Each sample was locked and shimmed automatically; the receiver gain was set to 90.5 and the temperature to 310 K for all experiments. The CPMG (Carr–Purcell–Meiboom–Gill) pulse sequence was employed to obtain the low molecular signal with the equation-delay-90°-(t-180°-t) n - acquisition, where the relaxation delay was 2 s and t was the spin-echo delay of 400 μs. All signals were zero-filled to 32 k prior to Fourier transformation (FT). All spectra were acquired and performed using the TopSpin software package version 3.0 (Bruker Biospin, Rheinstetten, Germany).
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2

NMR Spectroscopy of Biological Fluids

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All spectra were recorded using a Bruker AMX‐600 NMR (Bruker, Rheinstetten, Germany) spectrometer that was operated at a 600.13 MHz 1H resonance frequency. Quality control tests were performed at the beginning of every measurement day. A representative sample was used for NMR probe tuning and matching, determination of the transmitter offset value for water‐pulse pre‐saturation, and 90 pulse adjustments. Each sample was locked and shimmed automatically; receiver gain was set to 90.5 and temperature to 310 K for all experiments. All spectra were acquired and performed using TopSpin software package version 3.0 (Bruker Biospin, Rheinstetten, Germany). The NMR spectroscopy of urine samples was collected with a pre‐saturation 1H ‐ NOESY pulse sequence (equation as relaxation delay ‐90° ‐ t1‐90° ‐ tm‐90° acquisition, where the relaxation delay was 2 s, t1 was 4 μs, and tm was 100 ms). A total of 128 scans with a spectral width of 5 kHz was collected for all NMR spectra. All the signals were zero filled to 32 k before Fourier transformation. The NMR spectroscopy of serum samples was collected with Carr–Purcell–Meiboom–Gill (CPMG) pulse sequence (equation as relaxation delay ‐90°‐(t‐180°‐t) n ‐ acquisition, where the relaxation delay was 2 s, t was 400 μs).
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3

Proton NMR Spectroscopy of Plasma Samples

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The proton NMR spectra of the plasma were recorded at 300K on a Bruker Avance II 600 MHz spectrometer (Bruker Biospin, Rheinstetten, Germany) operating at a 1H frequency of 600.13 MHz and equipped with a broadband-observe probe.
A water-presaturated Carr-Purell-Meiboom-Gill pulse sequence (recycle delay −90o-(τ-180o-τ)n- acquisition) was employed to attenuate the NMR signals from macromolecules. A spin-spin relaxation delay (2) of 76.8 ms and a spin-echo delay τ of 400 μs were used. Typically, the 90o pulse was set to 13.7 μs, and 32 transients were collected in 49,178 data points for each spectrum using a spectral width of 9590 Hz and an acquisition time of 2.56 seconds.[30 ] After the Fourier transformation, phase correction and baseline correction were performed using the TopSpin software package, version 3.0 (Bruker Biospin, Rheinstetten, Germany). The 1H chemical shifts referred to the TMSP peak at δ 0.00.
The corrected NMR spectra, corresponding to the chemical shift range of δ 0.8 to 9.0, were imported into AMIX 3.9.5 (Bruker Biospin). All of the spectra were reduced into integral regions of equal lengths of 0.002 ppm. The region δ 4.20 to 5.20 that contained the resonance from residual water and the region of δ 5.50 to 6.00 that contained the resonance from urea were removed to avoid any contributions of H2O and urea to intergroup differentiations.
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