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Goat anti rat alexa fluor 555

Manufactured by Abcam
Sourced in France

Goat-anti rat Alexa Fluor 555 is a secondary antibody conjugated with the Alexa Fluor 555 fluorescent dye. It is designed to detect and visualize rat primary antibodies in various immunoassays and imaging applications.

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6 protocols using goat anti rat alexa fluor 555

1

Whole-Mount Confocal Microscopy of Mice and Live-Imaging of Zebrafish

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For mice, whole-mount confocal microscopy was performed as described (Yokomizo et al. 2012 (link)). Embryos were stained with rat anti-CD31 (MEC13.3, BD Biosciences), rabbit anti-Runx (EPR3099, Abcam), chicken anti-GFP (Invitrogen Molecular Probes), and rat anti-F4/80 (CI: A3-1, Abcam) primary antibodies and goat anti-rat Alexa Fluor 555 (Abcam), goat anti-rabbit Alexa Fluor 488, goat anti-chicken Alexa Fluor 647 (Jackson Immunoresearch), and goat anti-rat Alexa Fluor 647 (Invitrogen Molecular Probes) secondary antibodies. Specimens were analyzed using a Zeiss LSM 710 confocal microscope with 25× objectives using multitrack sequential mode. The pinhole was set at 1 airy unit; for three-dimensional (3D) reconstructions, steps were 5 µm per z-section.
For zebrafish, fluorescent reporter embryos were treated as indicated in the text and live-imaged under tricaine anesthesia as previously described (North et al. 2007 (link)) using a Zeiss SteREO Discovery V8 microscope.
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2

Corneal Immunostaining and Quantification

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Mice were sacrificed on day 7 after corneal AB for F4/80 immunostaining and on day 14 for CD31 immunostaining. The eyes were removed, fixed with 4% paraformaldehyde (PFA) overnight at 4 °C, and embedded in OCT. Sagittal sections (8 µm) were cut and blocked with 5% bovine serum albumin (BSA) in a Tris-buffered saline (TBS) buffer for 1 h at room temperature. Then, the sections were incubated with rat anti-F4/80 (Cat. No. Ab6640, 1:100, Abcam, Cambridge, UK) or rabbit anti-CD31 (Cat. No. Ab28364,1:50, Abcam) primary antibody overnight at 4 °C and further incubated with goat-anti-rat Alexa Fluor 555 (Cat. No. 4417, 1:1000, Cell Signaling Technology (CST), Danvers, MA, USA) or goat-anti-rabbit Alexa Fluor 555 (Cat. No. 4413, 1:1000, CST) secondary antibody for 1 h at room temperature. After counterstaining with DAPI (Abcam), the sections were examined with a fluorescence microscope (Nikon, Tokyo, Japan). We recognized the CD31+DAPI+ or F4/80+DAPI+ double immunostaining cells in the corneal stroma and count them at 20× magnification in five different fields of each immunostaining section manually. For each sample, three planes were selected evenly within the pupillary zone. Subsequently, three sections were selected from each plane. The counting work was all performed by the same two observers not aware of the experimental design and groups of study [25 (link)].
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3

Microscopic Imaging of Embryonic Vasculature

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Embryos were prepared as previously described (Yokomizo et al., 2012 (link)). A Zeiss LSM 710 AxioObserver inverted confocal microscope with ZEN 2011 software was used to acquire Z-projections and single optical projections. Images were processed using Fiji software (Schindelin et al., 2012 (link)). 3-dimensional reconstructions were produced using Volocity software (PerkinElmer). The following primary antibodies were used; rat anti-mouse CD31 (Mec 13.3, BD Pharmingen, San Diego, CA), rat anti-mouse CD117 (2B8, eBioscience, San Diego, CA), chicken anti-GFP (polyclonal, Thermo Fisher Scientific, Waltham, MA), rabbit anti-mouse Prox1 (AngioBio, San Diego, CA) and rabbit anti-human/mouse Runx (EPR3099, Abcam, Cambridge, MA). Secondary antibodies used were goat anti-rat Alexa Fluor 647 (Invitrogen, Carlsbad, CA), goat-anti rat Alexa Fluor 555 (Abcam), donkey anti-rat Alexa Fluor 555 (Abcam), goat anti-chicken Alexa Fluor 647 (Jackson ImmunoResearch, West Grove, PA) and goat anti-rabbit Alexa Fluor 488 (Invitrogen).
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4

Zebrafish Embryo Imaging and Analysis

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Embryos were prepared as previously described (Yokomizo et al., 2012 (link)). A Zeiss LSM 710 AxioObserver inverted confocal microscope with ZEN 2011 software was used to acquire Z-projections and single optical projections. Images were processed using Fiji software (Schindelin et al., 2012 (link)). 3-dimensional reconstructions were produced using Volocity software (PerkinElmer). The following primary antibodies were used; rat anti-mouse CD31 (Mec 13.3 , BD Pharmingen, San Diego, CA), rat anti-mouse CD117 (2B8, eBioscience, San Diego, CA), chicken anti-GFP (polyclonal, Thermo Fisher Scientific, Waltham, MA) and rabbit anti-human/mouse Runx (EPR3099, Abcam, Cambridge, MA). Secondary antibodies used were goat anti-rat Alexa Fluor 647 (Invitrogen, Carlsbad, CA), goat-anti rat Alexa Fluor 555 (Abcam), donkey anti-rat Alexa Fluor 555 (Abcam), goat anti-chicken Alexa Fluor 647 (Jackson ImmunoResearch, West Grove, PA) and goat anti-rabbit Alexa Fluor 488 (Invitrogen).
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5

Immunofluorescence analysis of hematopoietic cells

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Embryos were prepared as described previously (Yokomizo et al., 2012 (link)). The following primary antibodies were used; rat anti-mouse CD31 (Mec 13.3, BD Pharmingen, San Diego, CA), rat anti-mouse CD117 (2B8, eBiosciences, San Diego, CA), rat anti-mouse CD41 (MWReg30, BDBiosciences, Franklin Lakes, NJ) and rabbit anti-human/mouse Runx (EPR3099, Abcam, Cambridge, MA). Secondary antibodies used were goat anti-rat Alexa Fluor 647 (Invitrogen, Carlsbad, CA), goat-anti rat Alexa Fluor 555 (Abcam) and goat anti-rabbit Alexa Fluor 488 (Invitrogen). Images were acquired on a Zeiss LSM 710 AxioObserver inverted microscope with ZEN 2011 software and processed with Fiji software (Schindelin, et al., 2012 (link)). Hematopoietic cells in the dorsal aorta were counted using the cell counter plugin (version February 29, 2008, Kurt De Vos; http://rsb.info.nih.gov/ij/plugins/cell-counter.html).
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6

BrdU Incorporation Assay in Macrophages

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For BrdU incorporation assays, mice were injected intraperitoneally with 1 mg BrdU (Santa Cruz, Heidelberg, Germany) in 100 μl PBS 2 h prior to sacrifice and organ harvest. Intracellular staining was performed using the anti-BrdU antibody (Abcam, Paris, France, 1/100 dilution) after acid treatment to unwind the DNA and help antibodies access to DNA incorporated BrdU. After neutralization with sodium borate, anti-BrdU Ab was revealed with goat anti-rat Alexa fluor 488 (Abcam, Paris, France, 1/500 dilution). Macrophages were then stained with an anti-CD68 Ab (Biolegend, Saint-Quentin-En-Yveline, France, 1/200 dilution) revealed with goat anti-rat Alexa fluor 555 (Abcam, Paris, France, 1/500 dilution). DAPI- and WGA-stained nuclei and membranes, respectively.
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