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3 protocols using sc 7898

1

Western Blot Analysis of Cell Cycle Regulators

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Cellular extracts were prepared as previously described [5 (link)]. Protein concentrations in supernatants were determined using CD Protein Assay (Bio-Rad Laboratories, Hercules, CA, USA). We performed Ponceau S staining to confirm correct protein transfer. Western blots were performed with 20–30 μg of total protein extract, using antibodies against: E2F1 (1:400, sc-256 Santa Cruz, CA, USA), E2F2 (1:400, sc-633 Santa Cruz), TK1 (1:1000, A5-29686 Invitrogen), DCK (1:400, sc-393099 Santa Cruz), TS (1:400, sc-3930945 Santa Cruz), P-CHK1 Ser345 (1:1000, 2348 Cell Signaling, Danvers, MA, USA), CHK1 (1:400, sc-7898 Santa Cruz), P-RPA Ser4/8 (1:1000, A300-245A Bethyl, Waltham, MA, USA), RPA (1:1000, ab2175 Abcam, Cambridge, UK), Phospho-CDK1 Tyr15 (1:1000, 9111 Cell Signaling), CDK1 (1:1000, ab18 Abcam), HSP90 (1:2000, sc-13119 Santa Cruz). Immunocomplexes were visualized with horseradish peroxidase-conjugated anti-mouse (1:4000, sc-3697 Santa Cruz) or anti-rabbit (1:4000, sc-2030 Santa Cruz) IgG antibodies, followed by chemiluminescence detection (ECL, Amersham, GE Healthcare Bio-Sciences, Pittsburgh, PA, USA) with a ChemiDoc camera (Bio-Rad Laboratories, Hercules, CA, USA). Densitometry-based quantification was performed using Fiji software. Relative optical density was calculated by dividing the densitometry of the protein of interest with the respective loading control.
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2

Immunoblotting of DNA Repair Proteins

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Cells were lysed in RIPA buffer in the presence of 1 × protease inhibitor cocktail (Sigma). An aliquot of 50 μg total protein was run on an SDS-PAGE gel and transferred to Hybond ECL membrane (GE Healthcare). This membrane was immuno-blotted with antibodies against MUS81 (1:1000, ab14387, Abcam), GRB2 (1:1000, 610112, BD Transduction Laboratories), p21 (1:1000, 2947, Cell Signaling Technologies), phospho-CHK1 (pS317, 1:1000, A300–163A, Bethyl), CHK1 (1:1000, sc-7898, Santa Cruz), and Actin (1:5000, A2547, Sigma). Immuno-reactive proteins were visualized using ECL reagents (Roche) following the manufacturer's instructions.
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3

Comprehensive Immunostaining Protocol for DNA Damage Response

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And-1 antibody was obtained from Novus (#NBP1-89091, dilution: 1:500 for WB and 1:100 for IF). BRCA1 (D-9, dilution: 1:100 for IF, Santa Cruz) and (C-20, 1:200 for WB and IP, Santa Cruz), HA (H9658, dilution: 1:1000 for WB and IP, Sigma), FLAG (F3165, dilution: 1:1000 for WB and IP, Sigma), γH2AX (05-636, dilution: 1:500 for IF, Millipore), CtIP (61141, dilution: 1:500, Active Motif) for IF and (sc-28324, dilution 1:11 000) for WB, Chk1 (sc-7898, dilution: 1:1000 for WB, Santa Cruz), and P-Chk1-317 (2344S, 1:500 for WB, Cell Signaling), MDC1 (ab11171, 1:500 for IF), NBS1(ab32074, 1:200 for IF) were used. Antibodies against RPA, RAD51 and 53BP1 were previously described (47 (link)–49 (link)). And-1 full-length was subcloned from pEFF-And-1(a kind gift from Dr Zhu) (44 (link)) into the FLAG-tagged vector (pIRES2-EGFP) and HA-tagged vector (pCMV-HA) and GFP-tagged vector (pFUGW). And-1 deletion mutants were generated by site-directed mutagenesis and confirmed by sequencing. Full-length CtIP and D1–D6 deletion mutants were kindly provided by Dr Chen (50 (link)).
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