Mutants with inactivation of lncRNAs (transcr_20548 in BMA64-1A, transcr_10027 in BY4742, and transcr_3536 in SEY6210) and coding genes (CTA1 and IXR1 in BMA64-1A) were generated using CRISPR–Cas9. The genomic target regions were inserted into the pMEL16 plasmid (Addgene 107922) via PCR. Competent yeast cells were transformed with the modified pMEL16 plasmid, p414-TEF1p-Cas9-CYC1t plasmid (Addgene 43802), and the repair DNA. Recovered cells were placed on drop-out His- plus G418 medium, followed by incubation. Mutants were confirmed by colony PCR and sequencing. The population rebound after EtOH stress relief was assessed for mutants and wild-type strains, and spot tests were performed to assess the highest EtOH tolerance level of each mutant (Supplementary Table S19).
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