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15 protocols using alexa fluor 488 anti mouse igg antibody

1

Constitutive Cytosolic dsDNA Expression Analysis

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Immunofluorescence staining was performed to assess the constitutive cytosolic double stranded DNA (dsDNA) expression in untreated cells. ID8-Trp53–/–; Pten–/– or ID8-Trp53–/–; Brca1–/– cells were seeded at a density of 5×105 on coverslips placed in a 6-well plate and left to adhere overnight in complete growth media at 37°C/5% CO2. Coverslips were washed with phosphate-buffered saline (PBS) and fixed for 10 min with 4% PFA. Following permeabilization of cells (0.2% Triton X-100 in 1× PBS) and blocking (0.1% Triton X-100, 1% bovine serum albumin in 1× PBS) at room temperature (RT), cells were incubated in anti-dsDNA monoclonal antibody (1:100; EMD Millipore, Ontario, Canada) overnight at 4°C. Coverslips were washed with blocking solution three times at RT and incubated in blocking buffer containing Alexa Fluor 488 anti-mouse IgG antibody (1:300; Invitrogen, Massachusetts, USA) for 1 hour at RT in the dark. After counterstaining with DAPI for 10 min, coverslips were rinsed with PBS and mounted with antifading fluorescence medium (Invitrogen, Massachusetts, USA) onto a slide. Slides were imaged using EVOS Cell Imaging System and quantified using ImageJ software.
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2

Cathepsin D Immunofluorescence Assay

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IF analysis was performed as described from previous reports [5 (link), 7 (link)]. Cells were fixed in 10% trichloroacetic acid and permeabilized with 0.5% Triton X-100 in PBS. After blocking with PBS containing 1% bovine serum albumin and 0.01% Triton X-100 for 1 h at 4°C, the cells were incubated with mouse anti-Cathepsin D (dilution: 1/1000) overnight at 4°C. Bound antibody was visualized using Alexa Fluor 488 anti-mouse IgG antibody (Invitrogen, dilution: 1/2000). The cells were mounted in VECTASHIELD Mounting Medium with DAPI (Vector Laboratories) and observed under a fluorescence microscope (DM6000 B, Leica, Wetzlar, Germany).
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3

Immunofluorescence Staining of LC3B and CD45

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Cells were fixed in cold methanol for 5 min. After blocking with PBS containing 1% bovine serum albumin and 0.01% Triton X-100 for 1 h at 4 °C, the cells were incubated with anti-LC3B (Sigma-Aldrich Co.) and/or human CD45-FITC antibodies (Becton, Dickinson and Company, Franklin Lakes, NJ, USA) overnight at 4 °C. Bound antibodies were visualized using Alexa Fluor 488 anti-mouse IgG antibody (Invitrogen, Carlsbad, CA, USA). The cells were mounted in VECTASHIELD Mounting Medium with DAPI (Vector Laboratories, Burlingame, CA, USA). Images were obtained by confocal fluorescence microscopy (Nikon, Tokyo, Japan).
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4

Peach Kernel Extract Effects on Smad Signaling

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HSC-T6 (1 × 105) cells were seeded on slides containing poly-l-lysine coating and placed in a 6-well dish for overnight culture. Cells were treated with indicated concentrations of peach kernel extracts for 24 h. The cell medium was replaced with serum-free DMEM for 4 h, stimulated with 100 ng/mL LPS for 30 minutes, and then fixed with PBS containing 4% paraformaldehyde at 25°C for 2 h. Then, cells were perforated with PBS containing 0.1% Triton X-100 and incubated in a blocked buffer (PBS containing 2% BSA) for 1 h. Cells were stained with anti-Smad antibody followed by Alexa Fluor 488 anti-mouse IgG antibody (Invitrogen) for 1 h. Nuclei were stained with DAPI reagent for 15 minutes; then, slides were embedded with a mounting reagent and observed under a fluorescence microscope (Leica TCS SP5 scanner, Bensheim, Germany).
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5

Immunofluorescence Microscopy of p62

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Cells were fixed in 10% trichloroacetic acid and permeabilized with 0.5% Triton X-100 (Sigma-Aldrich) in PBS. After blocking with PBS containing 1% bovine serum albumin and 0.01% Triton X-100 for 1 hour at 4 C, the cells were incubated with mouse anti-p62 (dilution, 1:2000) overnight at 4 C. Bound antibody was visualized using Alexa Fluor 488 anti-mouse IgG antibody (dilution, 1:2000; Invitrogen). The cells were mounted by VECTASHIELD Mounting Medium with DAPI (Vector Laboratories) and observed under a fluorescence microscope (model DM6000 B; Leica, Wetzlar, Germany).
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6

Immunofluorescent Localization of 4-HNE

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The deparaffinized slides were incubated with anti-4-hydroxynonenal (4-HNE, Abcam) antibody at 4 °C overnight. After removing the first antibody and washing with PBS, they were incubated with Alexa Fluor 488 anti-mouse IgG antibody (ThermoFisher, Waltham, MA, USA) for 1 h at room temperature. The slides were visualized by fluorescence microscopy using the Zeiss Axiovert 200 inverted microscope. Nuclei were counterstained with 4′6-diamidino-2-phenylindole (DAPI).
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7

Immunostaining of Epitope-Tagged Proteins

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Cells grown on glass coverslips were permeabilized and blocked using phosphate-buffered saline (PBS) plus 3% bovine serum albumin and 0.01% saponin. Tags were detected by immunostaining with anti-myc epitope antibody (9E10, Merck Millipore) and AlexaFluor-488 anti-mouse IgG antibody (Thermo Scientific), and polyclonal anti-HA (HA.11, Biolegend) and anti-rabbit-Alexa 594 antibody (Thermo Scientific). The coverslips were mounted with Mowiol 4–88.
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8

Characterization of Human Pluripotent Stem Cells

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hPSCs were harvested as single cell suspensions, fixed with 2% para-formaldehyde, then stored in 10% FBS in PBS. For detection of extracellular antigens, hPSCs were kept in 10% FBS in PBS. For detection of intracellular antigens, hPSCs were resuspended in 0.1% saponin permeabilization buffer in 10% FBS in PBS for 15 min [15 (link),51 (link)]. hPSCs were incubated for 20 min with the following primary antibodies: 2 μg/μL anti-TRA-1-60 and 2 μg/μL anti-TRA-1-81 (Abcam, Cambridge, UK); or 0.25 μg/μL anti-OCT4 antibody (BD Biosciences). The anti-TRA antibodies were detected using Alexa Fluor-488 anti-mouse IgM secondary antibody (Thermo Fisher Scientific, Sydney, Australia), and the anti-OCT4 antibody using Alexa Fluor-488 anti-mouse IgG antibody (Thermo Fisher Scientific). Samples were analyzed using a MACSQuant® Analyser Flow Cytometer (Miltenyi Biotec, North Ryde, Australia). Biological replicates for each sample were averaged, and comparisons were made using the Student’s t-test.
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9

Immunofluorescence Staining of Cultured Cells

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Cultures were fixed with 4% paraformaldehyde (Sigma-Aldrich, Japan) in PBS for 12 hours, treated with 0.2% Triton X100 for 6 hours, and then stained with rhodamine phalloidin (Cytoskeleton, Inc., Denver, CO, USA) and 4ʹ,6-diamidino-2-phenylindole (DAPI) for 12 hours at 4°C. After washing three times with PBS, fluorescent images were taken with a fluorescence microscope and a confocal laser scanning microscope. For the SMC layers, the cultures were fixed with 4% paraformaldehyde and then incubated with mouse anti-α-actin antibody (1:100) (Thermo Fisher Scientific Inc., Japan) for 24 hours at 4°C. After washing three times with PBS, cells were incubated with a secondary antibody, Alexa Fluor 488 antimouse IgG antibody (Thermo Fisher Scientific Inc., Japan) for 2 hours. During the last 30 minutes, DAPI was added to the culture.
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10

Immunolocalization of 5-Methylcytosine

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Immunolocalization of 5mdC was performed as previously described (Solís et al., 2012 (link); Testillano et al., 2013 (link)). Historesin semithin sections were mounted on 3-aminopropyltriethoxysilane- coated slides, denatured with 2N HCl for 45 min, washed in PBS and treated with 5% bovine serum albumin (BSA) in PBS for 10 min, incubated with anti-5mdC mouse antibody (Eurogentec) diluted 1/50 in 1% BSA and Alexa-Fluor-488 anti-mouse IgG antibody (Molecular Probes) diluted 1/25. As negative controls, either DNA denaturation step or first antibody was omitted. Sections were counterstained with 1 mg mL-1 DAPI (4′,6-diamidino-2-phenylindole) for 10 min and analyzed by confocal laser microscopy (TCS-SP5, Leica). Images of maximum projections were obtained with software running in conjunction with the confocal microscope (Leica software LCS version 2.5). Confocal microscopy analysis was performed using the same laser excitation and sample emission capture settings in all immunofluorescence preparations of each species, rapeseed or barley, allowing an accurate comparison between signals of control and AzaC-treated cells.
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