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6 protocols using n palmitoyl d erythro sphingosine

1

Synthesis and Characterization of Ceramides

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N-lauroyl-D-erythro-sphingosine (C12 : 0 CER), N-palmitoyl-D-erythro-sphingosine (C16 : 0 CER), and N-lignoceroyl-D-erythro-sphingosine (C24 : 0 CER) were purchased from Avanti Polar Lipids (Alabaster, AL, USA). CER from bovine brain was obtained from Sigma-Aldrich (St. Louis, MO, USA). All other reagents were of reagent, HPLC, or LC-MS grade.
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2

Sphingolipid Standards Acquisition

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N-palmitoyl-D-erythro-sphingosine (Cer16:0), N-stearoyl-D-erythro-sphingosine (Cer18:0), N-lignoceroyl-D-erythro-sphingosine (Cer24:0) and N-nervonoyl-D-erythro-sphingosine (Cer24:1) were obtained from Avanti Polar Lipids, Inc., Alabaster, AL, while their respective isotope-labeled standards used as an internal standard (IS) were purchased as a mixture (LIPIDOMIX® Mass Spec Standard solution) from Avanti Polar Lipids, Inc., Alabaster, AL, USA.
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3

Lipidomic Internal Standards Protocol

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1-palmitoyl-2-hydroxy-sn-glycero-3-phosphocholine (C16:0 LPC), 1-stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (C18:0 LPC), N-palmitoyl-D-erythro-sphingosylphosphorylcholine (d18:1/16:0 SM), N-stearoyl-D-erythro-sphingosylphosphorylcholine (d18:1/18:0 SM), N-palmitoyl-D-erythro-sphingosine (d18:1/16:0 ceramide), N-lignoceroyl-D-erythro-sphingosine (d18:1/24:0 ceramide) and ceramide/sphingolipid internal standard mixture I (contains C17 base sphingosine, C17 base sphinganine, C17 base sphingosine-1-P, C17 base sphinganine-1-P, lactosyl(ß) C12 ceramide, 12:0 sphingomyelin, glucosyl(ß) C12 ceramide, 12:0 ceramide, 12:0 ceramide-1-P, 25:0 ceramide) were purchased from Avanti Polar Lipids (Alabaster, AL, USA). Standard stock solutions were dissolved in chloroform/methanol 1:1 (v/v) at a concentration of 1 mM and stored at −20 °C. Lipid standard mixtures were prepared freshly every day in lipid buffer (2:1:1; Isopropanol, LC/MS Grade Merck Millipore, MA, USA; Acetonitrile; H2O, LC/MS reagent, 9831-2, J.T.Baker, Phillipsburg, NY, USA) at a concentration of 25 μM and used immediately.
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4

Ceramide Quantification via LC-MS/MS

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Ceramides were extracted and analyzed via an liquid chromatography-electrospray ionization/multistage mass spectrometry system (API 3000 PE Sciex; Spectralab Scientific) in positive ionization as formerly described (Ramírez et al., 2013 (link)). Concentrations were measured by multiple reaction monitoring experiments using N-heptadecanoyl-D-erythrosphingosine (C17- ceramide) as an internal standard (50 ng/ml). The method was linear over the range from 2 to 600 ng/ml using as patrons N-palmitoyl-D-erythro-sphingosine (C16 ceramide) and N-stearoyl-D-erythro-sphingosine (C18 ceramide; Avanti Polar Lipids).
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5

Evaluating Skin Barrier Function

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Transepidermal water loss (TEWL) was measured using a VapoMeter (Delfin Technologies, Finland). Two sites per mouse were used for TEWL measurements. TEWL values were determined by triplicate measurements and the mean was defined as the TEWL value of every measurement site. After 3 days with skin washes as described above, TEWL was measured and mice were distributed into groups, so that the average TEWL of all groups was similar. On the fourth day, 2 × 108 CFU (4 × 107/cm2) of bacteria or 2.7 μg Sph protein or 50 μg ceramide d18:1/16:0 (N-palmitoyl-D-erythro-sphingosine, Avanti Polar Lipids, Inc.) were applied onto the compromised skin. TEWL was measured again 24 h later. For qRT-PCR of ceramide synthesis enzymes, skin tissues at the application sites were cut and saved in 1 ml of RNAlater solution (Invitrogen) at 4 °C. 50 mg tissue was cut up into small pieces, mixed with 1 ml of QIAzol Lysis Reagent and homogenized using Lysing matrix A (MP Biomedicals) twice at 1800 oscillations/min for 1 min in a FastPrep 96 homogenizer. RNA was extracted following the Qiazol Handbook (Qiagen). Then, the air dried RNA pellet was purified using an RNeasy Plus kit (Qiagen) according to the manufacturer’s protocol. qRT-PCR was performed with a SuperScript III Platinum SYBR Green One-Step qRT-PCR kit (Invitrogen). See Table S2 for oligonucleotides.
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6

Ceramide Quantification via LC-MS/MS

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Ceramides were extracted and analyzed via an liquid chromatography-electrospray ionization/multistage mass spectrometry system (API 3000 PE Sciex; Spectralab Scientific) in positive ionization as formerly described (Ramírez et al., 2013 (link)). Concentrations were measured by multiple reaction monitoring experiments using N-heptadecanoyl-D-erythrosphingosine (C17- ceramide) as an internal standard (50 ng/ml). The method was linear over the range from 2 to 600 ng/ml using as patrons N-palmitoyl-D-erythro-sphingosine (C16 ceramide) and N-stearoyl-D-erythro-sphingosine (C18 ceramide; Avanti Polar Lipids).
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