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18 protocols using se9000

1

Hematological Parameters and Lifestyle Factors

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Hematological parameters, determined using an automated counter (Sysmex SE9000; Sysmex, Kobe, Japan), were obtained from the results of regular medical check-ups. Anemia was defined as hemoglobin of <14 g/dL
[28 ]. Body mass index (BMI) was defined as the ratio of the individual’s weight (kg) to the square of their height (m). A survey of coffee intake, habitual smoking, alcohol consumption and green tea intake was performed using a questionnaire. As in previous reports
[17 (link), 18 (link)], coffee consumption was categorized based on the number of cups of coffee per day (<1 cup per day, 1 to 3 cups per day, ≥4 cups per day). Habitual smoking was classified as non- or ex-smokers and current smokers. Alcohol consumption was classified based on drinking frequency (daily drinkers; occasional drinkers, which included those who drink several times per week or per month; and non- or ex-drinkers). Green tea consumption was classified based on the number of cups of green tea per day (<1 cup per day, 1 to 4 cups per day, ≥5 cups per day).
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2

Blood Collection and Analysis Protocol

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Blood samples were obtained by venipuncture from the antecubital vein and collected into vacutainer tubes. Specifically, 7 mL of blood was collected into a K3EDTA-treated tube and 7 mL into a heparin-treated tube. For the blood dispensed into the heparin vacutainer, 1 mL was immediately added into an Eppendorf tube to measure neutrophil degranulation. The blood collected into the K3EDTA vacutainer was used to measure blood composition and cell counts within 30 min. After centrifugation at 1500× g for 10 min at 4 °C, the remaining K3EDTA tubes were stored at −20 °C for later analysis of plasma. To obtain accurate measurements, the whole blood sample was stored at a temperature of 20–24 °C and lymphocyte subsets were measured within 6 h, with no centrifugation or agitation but gentle and multi-axis mixing before testing [33 (link)]. Total and differential leukocyte counts, as well as hematological analysis including hemoglobin and hematocrit, were measured using a hematology analyzer (Sysmex SE-9000, Sysmex Corporation, Kobe, Japan). Plasma volume changes were calculated from hemoglobin concentration and hematocrit measurements according to Dill and Costill [34 (link)].
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3

Integrative Acid-Base Assessment Protocol

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The pH and PCO2 were measured by blood gas analysis (Rapid Lab 865, Bayer Diagnostics, Tarrytown, NY, USA, at 37°C). Actual bicarbonate and base excess values were calculated according to the recommendations of the National Committee for Clinical Laboratory standards. Serum sodium, chloride, albumin and lactate concentrations were measured using central chemical analyzers (Roche Modular P800 Module, Roche Diagnostics, Indianapolis, IN, USA). We calculated the relative plasma volume changes in percentage from (Hb0/Hb90)–((1-Hct90/1-Hct0)), in which Hb is haemoglobin and Hct haematocrit, measured at 0 min and 90 min (Sysmex SE-9000, Sysmex Corporation, Kobe, Japan) [29 (link)]. We calculated, in each patient, the sodium chloride concentration difference as a measure of apparent strong ion difference and the corrected anion gap as a measure of strong ion gap [3 (link),4 (link),28 (link)]. The anion gap (AG) was calculated from sodium minus chloride and bicarbonate concentrations and the corrected AG from AG + (0.25 x (45-[albumin in g/L]))–(lactate in mmol/L) to estimate unmeasured, non-lactic acid, anions. Hence, we integratively used physochemical (according to Stewart) and Henderson-Hasselbalch principles to assess acid base status [2 (link),5 (link)].
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4

Biomarker Measurement in Clinical Trial

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Prior to treatment, and at 1, 3, 6 and 12 months after treatment, ~6 ml fasting cubital venous blood was drawn and ~3 ml venous blood was taken, placed at room temperature for 20 min and then centrifuged for 10 min using a centrifuge with a centrifugal radius of 15 cm and a speed of 1,000 x g at room temperature. The serum was separated for further analysis stored in the refrigerator at -70˚C. The serum total bilirubin (TB) and ALB levels were detected using an automatic biochemical analyzer (ARCHITECT C16000; Abbott Pharmaceutical Co. Ltd.). An automatic coagulation analyzer [PUN-2045A; BOOPU (Changzhou) Biotechnology Co., Ltd.] was used to detect the PT of anticoagulated whole blood. An automatic blood cell analyzer (SE9000; Sysmex Corporation) was used to determine the white blood cell (WBC) count, PLT count and hemoglobin (HGB) levels in whole coagulated blood.
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5

Biomarkers in Surgical Oncology

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During the study period, serum CRP (reference value: <5 mg/L) values as well as albumin (reference value: 35–55 g/L) values were measured through an automated analyzer (Roche Hitachi Cobas 8000, Rotkreuz, Switzerland), and hemoglobin, lymphocyte, platelet, and neutrophil counts were determined through a hematology analyzer (Sysmex SE-9000, Kobe, Japan). Preoperative HS-mGPS of 2, 1, and 0 were assigned to patients identified as having both hypoalbuminemia (<35 g/L) and a high CRP level (>3 mg/L), having either hypoalbuminemia or a high CRP level, and having neither hypoalbuminemia nor a high CRP level, respectively (12 (link)). To calculate the NLR, the neutrophil count/lymphocyte count ratio was derived; to calculate the PLR, the platelet count/lymphocyte count ratio was derived.
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6

Preoperative Systemic Inflammation Indices

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To probe the correlation between survival outcomes and systemic inflammatory indices, we performed preoperative blood laboratory tests within 1 week before curative surgery. According to the blood tests and recorded clinical symptoms and signs, severe infection status was excluded in all patients. The medical staff collected the hematological and biochemistrical parameters during the treatment from patient’s charts. Pretreatment biochemistry values of albumin (reference value: 35–55 g/L) and CRP (reference value: <5 mg/L) were measured using biochemistry automated analyzer (Roche Hitachi Cobas 8000, Rotkreuz, Switzerland) during the study period. Hematological results of lymphocyte, neutrophil, hemoglobin, and platelet were measured using the hematology analyzer (Sysmex SE-9000, Kobe, Japan). Preoperative CAR was calculated as follows: CRP level (expressed in mg/L)/albumin level (expressed in g/L). Similarly, we derived the preoperative NLR and PLR as follows: peripheral blood neutrophil count/lymphocyte count and platelet count/lymphocyte count, respectively. Next, mGPS was calculated using previously published methods (McMillan, 2008 (link)). Patients with both hypoalbuminemia (<35 g/L) and increased CRP levels (>10 mg/L), with one of these variables, and with none of these variables were assigned the scores of 2, 1, and 0, respectively.
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7

Biomarker Panel for Cardiovascular Health

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Blood samples were collected from the antecubital vein within 24 h of the echocardiography. Serum albumin was measured by a dye-binding bromocresol green procedure and C-reactive protein (CRP) was measured by latex agglutination immunoassay using a JCA-BM2250 analyzer (Japan Electron Optics Laboratory, Tokyo, Japan). White blood cells were measured by the direct current detection method using a Sysmex SE 9000 (Sysmex, Kobe, Japan). Blood samples were also analyzed for free T4, free T3, TSH and TRAb by the electrochemiluminescence immunoassay using Modular Analytica E170 (Roche Diagnostics, Rotkreuz, Switzerland).
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8

Comprehensive Biomarker Analysis in HIV Patients

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CBC tests were performed after an overnight fast and analyzed using a Sysmex SE9000 automated blood cell analyzer. Serum alanine aminotransferase (ALT), albumin, and other serum biochemical parameters were measured using an Olympus AU5400 automated biochemical analyzer. Lymphocyte detection was performed with a flow cytometer. HIV RNA was detected using a polymerase chain reaction machine. Plasma levels of cholesterol and triglycerides (TG) were determined using enzymatic methods. Low-density lipoprotein (LDL)-cholesterol levels were calculated using the Friedewald’s equation. All the detections and evaluations were performed in a central laboratory in the Department of Clinical Laboratory in Nanfang Hospital.
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9

Comprehensive Immune Cell Isolation and Enumeration

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Single cell suspensions of spleen, lymph nodes and thymus were obtained via 70-µm cell strainers in fluorescence-activated cell sorting (FACS) buffer (PBS containing 5% FCS). After lysis of red blood cells with ACK lysis buffer, cells were separated via 40-µm cell strainers and stained with flurochrome-conjugated antibodies (V500-coupled anti-CD45.2, V450-coupled anti-CD4, fluorescein isothiocyanate-coupled anti-CD8 (BD Biosciences, Heidelberg, Germany); APC-coupled anti-CD3 (Biolegend)) for 30 min at 4 °C in FACS buffer. Flow cytometry was performed using a BD LSR II Flow Cytometer (BD Biosciences) and analyzed with FlowJo software (FlowJo, Ashland, OR, USA).
Platelet counts were determined in whole blood drawn from the retroorbital plexus of isoflurane-anesthetized animals into 300 μL acid citrate-dextrose buffer. Platelet numbers were determined with an automated blood analyzer (Sysmex Se 9000, Kobe, Japan).
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10

Comprehensive Biomarker Analysis Protocol

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Leucocyte levels were conducted on a Sysmex SE9000 with a coefficient of variation (CV) of 5%. Neutrophil, eosinophil, basophil, lymphocyte, and monocyte levels on a Sysmex XE-2100 with a CV of 6%, 12%, 6%, 6%, and 15%, respectively. CRP was measured on a Cobas 8000, c702 modul with a CV of 6%, whereas orosomucoid was measured on a Cobas 8000, c502 modul with a CV of 9%. Ferritin was measured on a Modular E-modul with a CV of 7% and PTH was measured on a Cobas 8000 (Roche) with a CV of 7%. Measurements of hemoglobin (CV2%) and thrombocytes were both conducted on a Sysmex XE-2100. The vitamin D measurements of 25(OH)D3 (CV < 10%) and 1,25(OH)2D3 (< 18%) levels were measured with an isotope-dilution liquid chromatography-tandem mass spectrometry (LC-MS/MS).
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