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6 protocols using rab27a

1

Antibody Sources for Cytoskeleton Research

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Mouse monoclonal β-tubulin antibody was purchased from Sigma-Aldrich. Rabbit polyclonal antibodies were purchased from Abcam (KifC3, Rab27a) and Santa Cruz (Kif25 and Rab6). Mouse monoclonal antibody directed against Rab33B was purchased from the Frontier Institute, Shinko-nishi, Ishikari, Japan (Rab33bd5-Mo-Tk02).
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2

Proteomic Analysis of Extracellular Vesicles

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M-PER Mammalian Protein Extraction Reagent (Cat#78503, Thermo Fisher Scientific, Waltham, MA) together with Proteinase Inhibitor Cocktail (Cat#P8340, Sigma Aldrich, St. Louis, MO) were used to extract proteins from MDAw, MDAKDRab27a and MDAKDTRAF3IP2 cells or from conditioned media of MDAw (EXOMDAw) or MDAKDRab27a (EXOMDAKDRab27a) cells. After gel electrophoresis of equal amounts of protein using 12% Precise Tris-Glycine Gels (Cat#0025267, Thermo Fisher Scientific), Laemmli Sample Buffer (Cat#161-0747, BioRad Laboratories, Hercules, CA) and BenchMark Pre-Stained Protein Ladder (Cat#10748-010, Invitrogen, Carlsbad, CA) the proteins were electroblotted and the following primary antibodies were used: GAPDH (0.0002 mg/ml; Cat#ab9485, Abcam, Cambridge, MA), Rab27a (0.01 mg/ml; Cat#sc-22756, Santa Cruz Biotechnology, Inc.), TRAF3IP2 (0.01 mg/ml; Cat#WH0010758M1-100UG, Sigma-Aldrich), CD9 (0.01 mg/ml; Cat#MA1-19002, Thermo Fisher Scientific), or MHCII (0.01 mg/ml; Cat#MA1-19143, Thermo Fisher Scientific). Goat Anti-Rabbit IgG-HRP (Cat#sc-2004, Santa Cruz Biotechnology, Inc.) or Donkey Anti-Mouse IgG-HRP (Cat#sc-2318, Santa Cruz Biotechnology, Inc.) served as secondary antibodies.
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3

Protein Expression Analysis via Western Blotting

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Whole-cell lysates or exosome lysates were prepared using modified RIPA buffer containing protease and phosphatase inhibitor cocktail (Thermo Scientific, Waltham, MA), as described previously (Brenza et al., 2016 ; Harischandra et al., 2014 (link)). Cell lysates containing equal amounts of protein were separated on a 12–15% SDS-polyacrylamide gel. After separation, proteins were electro-blotted onto a nitrocellulose membrane, and nonspecific-binding sites were blocked by treating with LI-COR blocking buffer. Syn-1 (BD Bioscience), GFP (Abcam), Syn 211 (Santa Cruz), Rab27a (Santa Cruz), Caspase-3 (Cell Signaling), and β-actin (Sigma) primary antibodies were used to blot the membranes. Membranes were then developed with IR800-conjugated anti-rabbit or Alexa Fluor 680-conjugated anti-mouse secondary antibody for 1 h at RT. Western and slot blot images were captured with the Odyssey IR Imaging system (LI-COR) and data were analyzed using Odyssey 2.0 software.
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4

Protoporphyrin IX and Tyrosinase Melanogenesis Assay

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Protoporphyrin IX (CAS: 553-12-8; purity, >95%) and tyrosinase derived from mushrooms (T128536) were purchased from Aladdin (Shanghai, China). Antibodies against tyrosinase (ab180753, 1:500), MITF (ab20663, 1:2,000), TRP-1 (ab3312, 1:1,000), TRP-2 (ab221144, 1:1,000), and cytokeratin (ab7753, 1:200) were purchased from Abcam (Cambridge, UK). p-CREB (9198S, 1:1,000) and the antibody against CREB (9197S, 1:1000) were obtained from Cell Signaling Technology (MA, USA). LY83583 (sc-200314A), KT5823 (sc-3534B), and antibodies against GP100 (sc-393094, 1:500), KIF5b (sc-133184, 1:500), myosin Va (sc-365986, 1:500), melanophinin (sc-365735, 1: 500), Rab27a (sc-74586, 1: 500), and Cdc42 (sc-8401, 1:500) were obtained from Santa Cruz Biotechnology (CA, USA). RT-qPCR kits were purchased from Takara Biomedical Technology (Beijing, China). The BCA protein assay kit (P0011), cell lysis buffer (P0013), cGMP assay kit, antibody against β-actin (AF0003), donkey anti-rabbit immunoglobulin G (IgG) (Alexa Fluor 555–labeled) (A0453, 1:500), and goat anti-mouse IgG (Alexa Fluor 488–labeled) (A0428, 1:500) were obtained from Beyotime Biotechnology (Shanghai, China).
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5

Western Blot Analysis of Exosomal Markers

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Cells were detached by trypsinization and lysed in 0.2 mM HEPES (pH 7.4) containing 0.1% SDS, 1 mM Na3VO4 (phosphatase inhibitor) and protease inhibitor cocktail (10 µg/mL benzamidine, 2 µg/mL antipain, 1 µg/mL leupeptin and 1 mM PMSF). Purified exosomes were sonicated in 0.9% NaCl containing 1 mM PMSF. Protein concentration was quantified with the Bradford microplate system Gen5TM EPOCH (BioTek). Total protein extracts (30 µg/lane) were resolved by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride membranes (PVDF). Membranes were blocked with 5% skim milk in PBS/0.1% Tween (PBST) and then probed with antibodies against CD9 (m-monoclonal; Santa Cruz; 1:200), TSG101 (m-monoclonal; Santa Cruz; 1:200), ALIX (m-monoclonal; Cell Signaling; 1:500), Rab27a (m-monoclonal; Santa Cruz; 1:100), Calnexin (r-polyclonal; Abcam; 1:1000), HSP60 (r-polyclonal; Abcam; 1:20000), VE-Cadherin (m-monoclonal; Abcam; 1:1000), Lactadherin (m-monoclonal; Santa Cruz; 1:1000) and HSP90 (m-monoclonal; Abcam; 1:1000). Bound antibodies were then detected with peroxidase-labeled anti-mouse (Calbiochem 1:5000) or anti-rabbit (Calbiochem 1:3000) IgG. Blots were revealed with the EZ-ECL system (Biological Industries) on a C-DiGit Blot Scanner (LI-COR Biosciences)34 (link),36 (link).
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6

Melanocyte Protein Expression Analysis

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Melan-a melanocytes were lysed with RIPA buffer and 1X protease inhibitor cocktail (PIC) (Sigma-Aldrich). The protein extracts were separated at 200 V using SDS-PAGE and the separated proteins were then transferred to PVDF membranes (Pall, Glen Cove, NY, USA) at 25 V for 2 h. To analyze protein expression, the PVDF membranes were immunoblotted overnight at 4 °C with antibodies to β–actin (Sigma), MyoVa (Cell Signaling Technology, Danvers, MA, USA), Rab27a (Santa Cruz, Dallas, TX, USA), Mlph (Protein Tech Group Inc., Chicago, IL, USA), Tubulin (Cell Signaling Technology) and GR (Cell Signaling Technology). Secondary horseradish peroxidase (HRP)-conjugated anti-rabbit antibodies (Bethyl Laboratories, Montgomery, TX, USA) or anti-mouse antibodies (Bio-Rad, Hercules, CA, USA) were then incubated at room temperature for 1 h. Protein expression was detected using chemiluminescence ECL solution (Thermo, Waltham, MA, USA) and visualized with Chemi-Doc XRS (Bio-Rad).
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