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11 protocols using beta 3 tubulin

1

Immunocytochemistry of Pluripotent and Neural Markers

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Briefly, HS420 hESC and ReNcells cultured on cover slips coated with Matrigel (1/30 in DMEM) were fixed in 4% paraformaldehyde in phosphate buffered saline (PBS) for 10 min at room temperature, washed and processed for conventional immunocytochemistry. Cells were incubated with a primary antibody Oct4 (rabbit polyclonal 1/200, Abcam, ab18976), Nanog (mouse monoclonal, 1/800, Abcam ab 171380), Sox2 (goat polyclonal 1/400, ThermoFisher, tf-pa5-18406,), Beta-III tubulin (mouse monoclonal, 1/1000, Sigma, T8660), γ-H2A.X (rabbit polyclonal 1/1000, Abcam ab11174), Ki67 (rabbit monoclonal 1/250 Abcam, ab16667) diluted in PBS-Triton 0.1% for 1 h at room temperature (RT). Detection of primary antibodies was performed using appropriate species-specific Alexa 488-, Alexa 555- or Alexa 647-labeled secondary antibodies for 1 h at RT in the dark. The cells were finally stained with Hoechst 33342 or 4′-6-diamidino-2-phenylindole (DAPI) for nuclei identification. Slides were mounted in Fluorosave (Calbiochem, Merck Millipore). Controls included examination of the cell or tissue autofluorescence and omission of the first antibody. Images of the immunostained cells were captured on a Zeiss Axioskop 2 fluorescence microscope with an Axiocam Color HRC detector (Zeiss, Feldbach, Switzerland).
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2

Spinal Cord and Sciatic Nerve Immunohistochemistry

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Animals were first sacrificed with an overdose of sodium pentobarbital, and perfused transcardially with PBS followed by 4% PFA, before dissecting out the spinal cord and sciatic nerve. The tissue was cryoprotected in 30% sucrose solution at 4 °C for 3 days, embedded in OCT (RALamb UK) and cut longitudinally using a cryostat into 14 μm sections. Sections were washed in PBS (15 min, room temperature), permeabilized with 0.1% Triton X-100 (15 min, room temperature), blocked with 10% goat serum (1 h, room temperature) and incubated in primary antibodies (diluted in blocking solution) at 4 °C overnight. The following day, sections were washed with PBS, incubated with secondary antibodies (1 h, room temperature) and then mounted in Fluorosave. Primary antibodies were used against: talin (clone 8D4, Abcam, 1:20) and beta III tubulin (Sigma, 1:400).
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3

Immunostaining of Neuronal Cultures

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Neurones were cultured on laminin‐coated 1,5 mm cover‐slips and fixed for 20 min using 3% paraformaldehyde (VWR) at room temperature followed by permeabilization and blocking, using 0.1% saponin and 1% BSA (Sigma‐Aldrich) in PBS for 1 hr. Immunostaining with beta‐III Tubulin (#T2200, Sigma‐Aldrich) was performed overnight, while samples were incubated with the secondary antibody Alexa Fluor® 488 (Thermo Fisher Scientific) for 1 hr at a 1:1,000 dilution. Slides were mounted with ProLong® Diamond Antifade Mountant (Thermo Fisher Scientific) and 0.01 μg/ml DAPI (Sigma‐Aldrich). A Carl Zeiss fluorescent microscope was used for image acquisition.
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4

Immunofluorescence Staining of Cell Cultures

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Cell cultures on coverslips were fixed with 4% paraformaldehyde (PFA), permeabilized with 0.1% Triton X-100, blocked with goat or donkey serum and incubated with primary antibodies at 4 °C overnight. They were then washed and incubated with secondary antibodies for 1 h at room temperature before being mounted on slides. Primary antibodies were used against beta III tubulin (Sigma, 1:400), pY397 FAK (BD Biosource, 1:100), talin (clone 8D4, Abcam, 1:20), GFP (Abcam, 1:500), and mCherry (Clontech, 1:200).
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5

Evaluating Sensory Neuron Axon Growth

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Sensory neuron axon growth of DRGs was evaluated by assessing the length of outgrown axons. Lumbar DRGs were dissected and cultivated for 3 days in a neurobasal medium infused with B27 (2%, Gibco), fetal horse serum (2%, PAN-Biotech), glutamine (1%, Thermo Scientific), gentamycin (0.5%, Gibco) and neural growth factor (10 ng/ml, Sigma-Aldrich) on poly-d-lysine (0.2 mg/ml, Sigma-Aldrich) and laminin (1 µg/ml, Sigma-Aldrich)–coated slides in a 5% CO2-humified atmosphere. Axonal growth was determined after 72 h by fixation in 4% PFA and stained with primary antibody beta-III-tubulin (1:2000, Sigma-Aldrich, RRID: AB_262133). Imaging was performed with an inverted fluorescence microscope (BX51, Olympus). Axon lengths were measured with the NeuronJ plugin for ImageJ. Three to four DRGs of each rat were recorded and analysed.
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6

3D Neuronal Network Characterization

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At different time points (1, 2, 7 months) in 3D cultures, cells were evaluated for neuronal network density and differentiation into neurons and astroglial cells with immunostaining. The samples were fixed at different time points with 4% paraformaldehyde (PFA) solution in PBS. Fixation time was 20–30 mins for the 3D constructs. The cells were stained with beta-III tubulin and GFAP (Sigma-Aldrich) as markers for neurons and astrocytes, respectively. Primary antibody incubations were performed at 4 °C overnight, while the secondary antibody incubations were carried out at room temperature for 2 h. The volume covered in 3D stacks was measured using a custom code generated in MATLAB. Briefly, the 3D stacks corresponding to either beta-III tubulin or GFAP were binarized, such that there are only two possible values corresponding to each pixel (black or white). The volume covered was represented as the total number of positive pixels (black) divided by the total pixels (corresponding to either black or white pixels) of all the planes in the corresponding z-stack.
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7

Immunostaining of Cultured Sensory Neurons

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Half of the media was removed from the culture dish and replaced with an equal volume of 8% PFA and 30% sucrose solution. After a 30-minute incubation, the chambers were washed three times with 1xPBS for 5 minutes each. The chambers were blocked for one hour with 0.05% Triton X-100, 4% BSA, and 5% lamb serum diluted in 1xPBS. Chambers were then incubated with primary antibodies overnight at 4 °C. Following incubation, the chambers were washed three times with 1xPBS for five minutes each. Chambers were then incubated with secondary antibodies at room temperature for two hours. Slides were washed three additional times with 1xPBS, incubated with DAPI (1:1000) for ten minutes and mounted using Vectashield (Vector Labs). The following primary antibodies diluted in blocking solution were used to label sensory neurons in culture: Beta tubulin-III (Sigma Aldrich T2200; 1:1000). The following secondary antibodies from Life Technologies were diluted 1:1000 in blocking solution: Alexa-488 goat anti-rabbit.
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8

Immunocytochemical Identification of Stem Cells

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The cells (on TCPS and Scaffold) were fixed (4% paraformaldehyde), permeabilized (with 0.5% Triton X-100), incubated with primary antibodies for nestin (Millipore) and beta-tubulin III (Sigma) at 4°C overnight, and subsequently incubated with FITC-conjugated IgG (Santa Cruz Biotechnology) at room temperature for 1 hour. For nuclear staining, the cells were incubated with diaminobenzidine (DAB) solution (Sigma Chemical Co.) for 30 seconds.
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9

Immunoblotting Markers for Huntington's Disease

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Polyclonal anti-htt 1–17 Ab1(1μg/ml) [42 (link)], mAb 1C2 to polyglutamines (MAB1574, 1:1000; Millipore), mAb 3B5H10 to polyglutamines (P1874, 1:10,000; Sigma), p85 PI 3-kinase (1:500; #4292, Cell Signaling), AKT and phospho (Ser473) AKT (1:500; Cell Signaling); ERK and phospho ERK (1:1000; Cell Signaling); β-tubulin (1:4000; T8328, Sigma), beta3-tubulin (1:2000; Sigma), anti-GFAP (1:2000; Millipore), Rac1 (1:2000; Millipore), nestin (1:500; Millipore), DARPP32 (1:5000; Abcam), Islet1 (1:200; University of Iowa Developmental Studies Hybridoma Bank), GAPDH (1:6000; Millipore), α-actinin-2 (1:250; mAb clone EA-53, Sigma) or α-actinin-2 (1:2000; ab68167; Abcam; [31 (link)], α-actinin (2μg/ml; ab18061; Abcam; may cross react with isoforms 1–4).
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10

Immunofluorescence Staining of Neurons

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Cells were washed twice with D-PBS for 5 minutes and permeabilized for 30 minutes with 0.2% Triton X-100 and 1% BSA in PBS. Primary antibodies PBS solutions were then added and incubated at 4 °C overnight. After, two PBS rinses, cells were further incubated with solutions of the corresponding secondary antibodies for two hours at room temperature. The chips were then rinsed once with PBS and mounted in Mowiol-based medium. The following primary antibodies and dilutions were as follows: alpha-tubulin-FITC (Sigma); Microtubule Associated Protein -2 (Sigma; MAP-2, mouse or rabbit monoclonal (1/500); beta3-tubulin (Sigma; mouse monoclonal 1/500); cytochrome c (Cell Signaling 1/300). Species-specific secondary antibodies coupled to Alexa 350, 488, or 555 were used (1/500, Life Technologies,) to visualize bound primary antibodies.
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