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3 protocols using anti c myc

1

Arf1 GTPase Mutants and Organelle Markers

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All constructs were confirmed by DNA sequencing. pTKN101 (pVenus-GBF1) has been described previously30 (link). pCMS-EGFP-Arf1-T31N (pArf1-T31N-GFP) and pCMS-EGFP-Arf1-Q71L (pArf1-Q71L-GFP) were constructed by insertion of Arf1 mutant cDNAs into pCMS-EGFP (Clontech, Invitrogen) using BamHI and AgeI restriction enzyme sites, placing the mutant Arf proteins under control of the SV40 promoter. pRK5-myc-Miro1 (Plasmid 47888), pRK5-myc-Miro2 (Plasmid 47891) and pAc-GFP-Sec61b (Plasmid 15108) were purchased from Addgene (Cambridge, MA, USA). GFP-3x-Nup160 was a gift from Valérie Doye, Institut Jacques Monod - UMR7592 CNRS Université Paris-Diderot, Paris, France, and has been described44 (link). Cricetulus griseus (hamster) GBF1 was a gift of Paul Melançon (University of Alberta, Edmonton, Canada)45 (link). The following mouse monoclonal antibodies were used: anti-GBF1 (BD Biosciences, Franklin Lakes, NJ, USA, Cat. No 612116), anti-Miro1 (Sigma-Aldrich, St Louis, MO, USA, Cat. No SAB1407648), anti-α-tubulin (GeneTex, Irvine, CA, USA, Cat. No GTX628802), anti-γ-tubulin (Sigma-Aldrich, Cat. No T6557), anti-c-myc (Biolegend, San Diego, CA, USA, Cat. No 626802) and anti-GFP (Roche Diagnostics, Indianapolis, IN, USA, Cat. No 11814460001). Rabbit polyclonal antibodies against Miro2 (Cat. No HAP012624) and PTPIP51/RMDM3 (Cat. No HPA009975) were purchased from Sigma-Aldrich.
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2

Immunoprecipitation and Western Blotting Protocols

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The immunoprecipitation experiments were performed as previously described19 (link). Anti-FLAG M2 affinity gel (Sigma-Aldrich), anti-GFP agarose beads (GFP-Trap, Chromotek) or Anti-c-MYC agarose affinity gel (Sigma-Aldrich) were used for immunoprecipitation. The sample preparation for the western blotting was performed using an alkaline-protein30 (link) or TCA18 (link) extraction method. Anti-c-MYC (1:1,500 dilution; BioLegend), anti-GFP (1:1,500; Roche), Anti-FLAG M2 (1:1,500; Sigma-Aldrich), anti-ubiquitin (1:1,500; Cell Signaling Technology), anti-thiophosphate-ester (1:1,500, Abcam), anti-Xpress (1:1,500; Thermo Fisher), anti-phospho-Akt substrate (1:1,500; Cell Signaling Technology), anti-RPS6 (1:1,500; Cell Signaling Technology) antibodies and streptavidin-peroxidase (1:5,000; Sigma-Aldrich) were used for probing.
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3

Immunofluorescence Imaging of c-MYC Protein

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The immunofluorescence experiments were performed as previously described19 (link). Paraformaldehyde-fixed cells were incubated with the anti-c-MYC (BioLegend) antibody at 1:1,000. The cells were subsequently incubated with secondary antibody, Alexa Fluor 488-conjugated goat anti-mouse antibody (Molecular Probes). The cells were spread and air dried on a glass slide and the nuclei were stained with DAPI in ProLong Gold antifade mountant (Molecular Probes). Fluorescence signals were imaged using a DeltaVision Elite fluorescence microscope (Applied Precision, GE Healthcare) with a ×100/1.4-NA objective. Optical z sections (0.2-μm step size; five sections) were merged into one image using the maximum intensity projection method of the softWoRx software. Fiji (ImageJ, https://imagej.net/Using_Fiji) was used to process the images.
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