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11 protocols using db 17ms column

1

GC-ECD and GC-MS Analysis of PSD and OSU Extracts

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PSD extracts were analysed for 44 compounds including PRCs, internal standards and internal surrogates using an Agilent 6890N gas chromatograph (GC) with dual 7683 injectors, dual columns and dual electron capture detectors (ECD). The GC was configured with Agilent DB-XLB and Agilent DB-17MS columns. In addition to quantitative evaluation, OSU extracts were also screened for the presence/absence of over 1100 chemicals of concern (see electronic supplementary material, table S2) on an Agilent 6890N GC with 5975B Mass Selective Detector with a DB-5MS column. Limits of quantitation (LOQ) are detailed in the electronic supplementary material.
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2

Multi-Pesticide Analysis in Environmental Samples

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A total of 47 pesticides or pesticide degradation products were measured: 27 are classified as insecticides, 7 herbicides, 7 fungicides, and 6 pesticide degradation products. The method reflects our interest in insecticides for their potential human health impacts and includes 21 organochlorine, 3 organophosphate, and 3 pyrethroid insecticides. Pesticides were analyzed on an Agilent 6890N GC with dual 7683 injectors, dual columns, DB-XLB and DB-17MS columns (Agilent), and dual microelectron capture detectors (μ-ECD).47 (link)
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3

Deuterium Enrichment Analysis of DNA and Urine

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Deuterium enrichment in DNA from granulocytes and sorted T-cell fractions was measured according to the method described by Busch et al. (2007 (link)) with minor modifications. Briefly, DNA was enzymatically hydrolyzed into deoxyribonucleotides and derivatized to penta-fluoro-triacetate before injection (DB-17MS column; Agilent Technologies, Santa Clara, CA, USA) into the gas chromatograph (7890A GC System; Agilent Technologies). Penta-fluoro-triacetate was analyzed by negative chemical ionization mass spectrometry (5975C inert XL EI/CI MSD with Triple-Axis Detector; Agilent Technologies) measuring ions m/z 435 and m/z 436. For quantification of 2H enrichment, standard solutions with known enrichment (Tracer-to-Tracee ratios ([M + 1]/[M + 0]) 0, 0.0016, 0.0032, 0.0065, 0.0131, 0.0265, 0.0543, and 0.1140) were made by mixing 1-13C-deoxyadenosine (Cambridge Isotopes Inc.; generates an ‘M + 1′ ion) with unlabeled deoxyadenosine (Sigma, St. Louis, MO, USA). To correct for abundance sensitivity of isotope ratios, we followed the approach proposed by (Patterson et al., 1998 (link)) on log 10-transformed enrichment data. Deuterium enrichment in urine was analyzed on the same GC/MS system (using a PoraPLOT Q 25 9 0.32 column; Varian Medical Systems, Palo Alto, CA, USA) by electron impact ionization as previously described (Westera et al., 2013bb (link)).
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4

GC-ECD Analysis of Pyrethroids in Bees and Honey

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GC analysis was performed using two Agilent 6890 chromatographic systems connected to ECD detectors, in splitless injector mode. Chromatographic separation was performed on a DB-5-MS column (30 m. 0.32 mm i.d. and 0.25 μm film thickness, Agilent J&W, Folsom, CA, USA) and a DB-17 MS column (30 m. 0.3 mm i.d. and 0.25 μm film thickness, Agilent J&W, Folsom, CA, USA). The use of two different columns was necessary for confirmation purposes. Both systems were under the control of ChemStation chromatography manager and processing software. The helium carrier gas flow rate was set at 1.5 mL/min for both columns. Injectors’ temperature was set at 230 °C and the splitless injection was carried out with the purge valve closed for 1 min. Injection volume was 1 μL. GC-ECD analysis was utilized for pyrethroids detection in bees and honey as well.
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5

UHPLC and GC-MS Analysis of Volatile Oils

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The UHPLC (ultra-high performance liquid chromatography) analysis of WE and EE was performed according to our previous work (Dong et al., 2018 ; Li et al., 2019 ). The UHPLC system was Agilent 1260 system (Agilent Technologies, Inc., United States), which consisted of a DGU-20A5R degasser, a G7129A vial sampler, a G7115A DAD WR, a G7116A MCT, and a G7111A Quat pump VL. The separation was carried out on an Agilent C18 column (2.1 × 100 mm, 1.8 mm, Agilent Technologies, Inc., United States) with temperature at 40°C. The mobile phase was composed of water (containing 0.1% formic acid, solvent A) and Acetonitrile (solvent B). The gradient elution procedure was (0.01–5 min, 30–50% B, 5–7 min, 50% B, 7–7.5 min, 50–30% B, 7.5–10.5 min, 30% B). The flow rate was 0.3 ml/min and injection volume was 5.0 μl.
The volatile oil samples were subjected to GC-MS analysis using an Agilent 7890A-5975c and a DB-17MS column (length 30 m, inner diameter 0.25 mm, film thickness 0.25 μm) according to the modified method (Li et al., 2017 ).
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6

Gas Chromatography-Time-of-Flight Mass Spectrometry

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The analysis was carried out based on gas chromatography (Agilent 7890A, Agilent Technologies, Santa Clara, CA, USA) equipped with a cold-jet modulator and a time-of-flight mass spectrometer (Pegasus 4D, LECO Corp., Saint Joseph, MO, USA). The volatiles were separated via the TG-WAX capillary column (30 m × 0.25 mm, 0.25 μm, Agilent Technologies, Santa Clara, CA, USA) and the DB-17 MS column (2 m × 0.1 mm, 0.1 μm, Agilent Technologies, Santa Clara, CA, USA) as the first- and second-dimension columns, respectively. Helium (99.999%) served as the carrier gas at a flow rate of 1.0 mL/min in splitless mode. The column temperatures adhered to the following protocol: maintaining an initial temperature at 40 °C for one minute, then raised to 160 °C at 3 °C/min. Subsequently, the temperature was raised to 250 °C at a rate of 10 °C/min and held there for 5 min. The offset temperature of the secondary column oven was +5 °C compared to the GC oven, while the modulator temperature had an offset of +15 °C relative to the secondary column oven. After separation via two capillary columns, the analytes were ionized at 70 eV, and the spectra were collected in a mass range of 33–450 amu. The temperature of the ion source was set to 230 °C, while the interface temperature was set to 250 °C. The cold zone temperature was set to −50 °C, and the modulation time was 6 s.
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7

Methylation and GC-MS Analysis of PRP Samples

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The samples of PRP1 and PRP2 (each 20.0 mg) were methylated with the method reported (Song et al., 2017 (link)) and detected by Infrared spectroscopy (IR). The methylated samples were hydrolyzed, reduced and acetylated, successively. The obtained alditol acetates were detected by Gas chromatography-mass spectrometry (GC–MS). PRP0 did not methylate because of no more sample. GC–MS analysis: Agilent 5975C system (Agilent Technologies Inc., USA), DB-17 MS column. The starting temperature of the column is 50 °C, then raised to 230 °C (4 °C/min), finally reached to 280 °C (10 °C/min, maintain 15 min). Ion-source: 230 °C. N2: 1.0 mL/min.
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8

GC-MS Quantification of Organic Compounds

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The derivatized sample was injected into a gas chromatography-mass spectrometer (Shimadzu GCMS-QP2010; Kyoto, Japan) equipped with a DB-17 ms column (60 m long, 025 µm thick, 0.25 mm ID; Agilent). The carrier gas was helium at a flow rate of 0.8 mL/min. The column oven temperature was initially 50 °C and kept for 2 min, ramped up to 120 °C at 15 °C/min and maintained for 5 min, followed by 160 °C at 4 °C/min and 170 °C at 3 °C/min. The inlet, interface, and ion source temperatures were set at 250, 250, and 200 °C, respectively. The yields were calculated based on their peak areas using calibration lines prepared with commercial standards (Fig. S28a).
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9

GC-MS Metabolite Derivatization Protocol

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Polar phase samples, blanks and QC standards were chemically derivatized as described previously(20) to methoxime/trimethylsilyl derivatives, then analyzed by GS-MS using a Agilent/J&W DB17-MS column (30 m × 0.25 mm × 0.25 μm), a 3 m × 0.25 mm retention gap and helium carrier with a constant flow rate of 1.4 ml/min and a Pegasus high-throughput time-of-flight mass spectrometer (LECO; UK).
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10

GC-MS Analysis of Fuel Samples

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The GC-MS analysis was performed using a 0.25 mm (id) × 60 m DB-17MS column (50 % phenylmethylpolysiloxane, 0.25 μm film, [17 (link)] (Agilent Technologies, Wilmington, DE). The column was held isothermally at 60 °C for 1 min, ramped at 45 °C per min to 100 °C, held for 10 min, then ramped at 2 °C per min to 290 °C and held for 60 min. All injections were done on-column (1 μL) with helium as the carrier gas at a constant flow rate of 1.2 mL/min. The injection port temperature was held in an oven-track mode (3 °C above the oven temperature), and the auxiliary line temperature was held at 290 °C. Following an 8 min solvent delay, the MS scanned from 50 u to 350 u at 2.48 scans per second with the electron multiplier voltage set to 2000.
SRM 1494 (diluted as described above with SRM 2269 and hexane) was the first sample run to obtain retention times for the aliphatic compounds present in that SRM and for the deuterated compounds present in SRM 2269. Each fuel sample was run in triplicate with one run of hexane after each fuel sample to ensure that there was no carryover.
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