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11 protocols using af5393

1

Investigating Protein Expression in Lacrimal Fluid

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Clinical LF specimens (non-LFH group:LFH group = 2:2) were snap-frozen in liquid nitrogen and stored at −80°C for Western blotting. Total protein from each LF specimen was extracted in RIPA lysis buffer (Santa Cruz) and quantified using the BCA assay (Pierce). After denaturation, proteins specimens were separated using gel electrophoresis on 8%–12% SDS-PAGE, and then were transferred onto PVDF membranes (Roche Applied Science, Indianapolis, IN, USA). Using 5% nonfat dry milk for 2 hours at room temperature, The membranes were blocked in 5% nonfat dry milk for 2 h and then incubated overnight at 4°C with the following primary antibodies: Beclin1 (1:500; AF5128, Affinity), P62 (1:500; AF5384, Affinity), FN1 (1:500; AF5335, Affinity), TGFβ1 (1:500; AF1027, Affinity), NGF (1:500; AF5172, Affinity), HMOX1 (1:500; AF5393, Affinity), CAT (1:500; DF7545, Affinity), SIRT1 (1:500; TU365233, Abmart), and GAPDH (1:5000; AP0063, Bioworld). After, the membranes were incubated with goat anti-rabbit IgG (H+L) HRP secondary antibody (1:5000; RM3002, Rayantibody) for 2 h at room temperature. The proteins bands were detected using an enhanced chemiluminescence kit (KF005, Affinity), and chemiluminescence signals were quantified with Image Lab statistical software (Bio-Rad, Hercules, CA, USA).
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2

Quantitative Bone Histomorphometry Analysis

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After micro-CT scanning, the samples were decalcified in 10% EDTA (pH = 7.4) for 4 weeks, then embedded in paraffin. Histological sections were prepared for hematoxylin and eosin (H&E) and TRAP staining. Immunofluorescence staining was performed with antibodies against TNF-α (1:100; AF7014; Affinity, Cincinnati, OH, USA), Nrf2 (1:100; AF0639; Affinity, Cincinnati, OH, USA), and HO-1 (1:100; AF5393; Affinity, Cincinnati, OH, USA). The images of stained slices were captured under a high-quality microscope (Leica DM4000B). The relative fluorescence of stained slices was quantified by ImageJ software (NIH, Bethesda, MD, USA). The number of OCs and TRAP-positive multinucleated OCs per field (Oc.S/BS) were calculated.
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3

Western Blot Analysis of Cardiac Proteins

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Total protein samples from cardiac tissue or H9c2 cells were obtained with RIPA lysis buffer (strong) containing 1% protease inhibitors and protein concentrations were determined. After concentration determination, proteins were separated by SDS-PAGE (7.5–12.5%) and transferred to PVDF membranes. The membranes were blocked with 5% skim milk and incubated overnight at 4 °C with primary antibodies Nrf2 (A21176, ABclonal), HO-1 (AF5393, Affinity), TfR1 (AF5343, Affinity), GPX4 (DF6701, Affinity), NOX4 (DF6924, Affinity), ABCB8 (A2653, ABclonal), FXN (DF6590, Affinity) (antibody dilution ratio 1: 1000) and β-tubulin (1:3000, AF7011, Affinity), respectively. The membranes were then incubated with the secondary antibody HRP Goat Anti-Rabbit IgG (H+L) (1:5000, AS014, ABclonal) for 2 h at room temperature. Protein bands detected by an enhanced chemiluminescence system were analyzed using ImageJ software.
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4

Quantitative Protein Expression Analysis

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Differentially expressed proteins such as HMOX1, MP2K5, XRCC1 and A1AG were measured by Western blot. Human lung AEC-II cells (Lanmeng Biotechnology, Hebei, China) were harvested after the treatments. After lysis for 30 min on ice with Cell Protein Extraction Reagent, the total protein concentration was determined by BCA assay according to the manufacturer's instructions. Each sample containing approximately 50 μg of proteins was electrophoresed on 12% SDS-PAGE and transferred onto PVDF membranes. The membranes were blocked with 5% non-fat milk for 2 h at room temperature. Primary antibodies (DF6623, AF5393, AF0296, DF7667, Affinity Biosciences, OH, USA) were incubated at 4 °C overnight. After washing, the membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (ZB-2306, ZB-2305, ZSGB-BIO, Beijing, China). The immunoreactive bands were detected with an enhanced chemiluminescent (ECL) reagent kit according to the manufacturer's protocol and a chemiluminescence detection system. The obtained images were analyzed by Image J software to analyze the gray value of the target bands for relative quantitative information analysis of the proteins.
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5

Immunofluorescence Analysis of HO-1 and Nrf2

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Brain samples were collected on day 7 after ICH. Brain tissues or cell samples were washed with PBS and permeabilized with 0.1% Triton X-100. Samples were incubated with rabbit anti-HO-1 (1:200, AF5393, Affinity Biosciences) and mouse anti-Nrf2 (1:200; AF0639, Affinity Biosciences) at 4°C overnight. Following PBS washes, the samples were incubated with Alexa Fluor-conjugated secondary antibodies (anti-rabbit 488 or 594, 1:200, A32766, A48284, ThermoFisher Scientific, MA, USA) for 1 hour at room temperature, followed by incubation with 4′,6-diamidino-2-phenylindole (DAPI) for 2 minutes. Images were observed with a fluorescence microscope (Leica DM2500, Leica Co.) and analyzed using ImageJ software (NIH, Bethesda, MD, USA). The allocation signals in the dual-channel overlay images were analyzed with the ImageJ “Co-localization Finder” plugin.
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6

Protein Expression Analysis in Cells

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After treatment, the cells were harvested and lysed using a cell buffer (WB038, GEFAN, Nanjing, China), and their concentrations were estimated by a BCA kit (GM03, GEFAN). After denaturation, cells were subjected to protein electrophoresis. After transferring to a PVDF membrane (WB041, GEFAN), the membrane was sealed with 5% skim milk. After 2 h, cells were reacted with primary antibodies overnight at 4°C followed by incubation with a goat anti-rabbit secondary antibody IgG H&L (1:3000, S0001, Affinity Biosciences, Cincinnati, OH, USA) for 1 h at 37°C. Finally, a color reagent (E266188, Aladdin, Shanghai, China) was used to visualize the bound antibodies, which were then placed in a chemiluminescent instrument (610020-9Q, Clinx, Shanghai, China). The primary antibodies of the rabbit anti-human Nrf2 (1:2000, AF0639), SOD-1 (1:1500, AF5198), CAT (1:2000, AF7746), HO-1 (1:1500, AF5393), nuclear factor kappa B (NF- κB, 1:1500, AF5006), phospho-IkappaB-alpha (p-IKBα, 1:2000, AF2002), and GAPDH (1:20000, AF7021) were obtained from Affinity Biosciences .
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7

Protein Extraction and Western Blot Analysis

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The protein sample was collected from liver tissues using a protein extraction kit (BC3710, Solarbio, China) or a Nuclear and Cytoplasmic Extraction Reagent (78833, Thermo Fisher, USA). The protein was quantified using a BCA kit (PC0020, Solarbio, China). After separating the protein by SDS-PAGE, the protein was transferred into a polyvinylidene fluoride membrane (10600023, GE Healthcare Life, USA). The membrane was blocked by 5% BSA for 1 hour, then the membrane was reacted with primary antibodies and secondary antibodies. The relative intensity of the protein bands was quantified using ana ECL kit (36208ES60, YEASEN, China) with the iBright FL1500 Imaging System (A44115, Invitrogen, USA). The results were counted by ImageJ2x (Rawak Software, Germany). The primary antibodies and secondary antibodies were as follows: anti-p53 (AF0879, Affinity, USA), anti-β-actin (AF7018, Affinity, USA), Nrf2 (AF0639, Affinity, USA), Lamin B (DF6687, Affinity, USA), Heme oxygenase-1 (HO-1, AF5393, Affinity, USA), glyceraldehyde-3-phosphate dehydrogenase (GAPDH, AF7021, Affinity, USA), and goat anti-rabbit (S0001, Affinity, USA).
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8

Western Blot Analysis of NF-κB Pathway

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Cells were harvested and lysed in ice-cold RIPA (Radio-Immunoprecipitation Assay) buffer mixed with cocktail and PMSF for 30 min. The BCA protein assay kit (BB-3401, Shanghai Beibo Biotechnology, Shanghai, China) was used to measure the protein concentration. Then, equal amounts of protein were resolved by 7.5% to 12.5% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred onto polyvinylidene fluoride (PVDF) membranes.
After blocked with 5% skim milk for 2 h at room temperature, the membranes were incubated with appropriate primary antibodies against p-NF-κB p65 (CST, #3033S, 1:1000), NF-κB p65 (CST, #8242S, 1:1000), p-IKB-α (GeneTex, #32224, 1:1000), IKB-α (GeneTex, #110521, 1:1000), NLRP3 (Abcam, #ab263889, 1:1000), ASC (Affinity, #DF6304, 1:500), IL-1β (Affinity, #AF5103, 1:1000), caspase-1 (Affinity, #AF5418, 1:1000), Nrf2 (Affinity, #AF0639, 1:1000), HO-1 (Affinity, #AF5393, 1:1000) and β-actin (Affinity, #AF7018, 1:1000) overnight at 4°C. Subsequently, membranes were incubated with secondary HRP-conjugated goat anti-rabbit IgG (Immunoglobulin G, Affinity, #072102, 1:5000) for 1 h. Protein bands were visualized using the enhanced chemiluminescence (ECL) (Tanon 4200SF, China) detection system. The intensity of the bands was assessed using the ImageJ software (National Institutes of Health, Bethesda, MA, USA) tool.
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9

Western Blot Analysis of Inflammatory Markers

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Whole-protein extracts were obtained with sonication and separated on 10% SDS-PAGE and then were transferred onto PVDF membrane (Millipore, USA). Blocked with TBST (pH 7.5) containing 5% BSA, the membranes were incubated within primary antibodies against MCP1 (1 : 1200, DF7577, Affinity), iNOS (1 : 800, AF0199, Affinity), Arg1 (1 : 800, DF6657, Affinity), IL-1β (1 : 800, AF5103, Affinity), phosphorylated NF-κBp65 (1 : 1000, 3039, CST), NF-κBp65 (1 : 1000, 8242, CST), PPARγ (1 : 600, 2435, CST), HO-1 (1 : 1000, AF5393, Affinity), Nrf2 (1 : 1000, AF0639, Affinity), SOD1 (1 : 1000, AF5198, Affinity), the endogenous control β-actin (1 : 1000, 4970, CST), and GAPDH (1 : 1000, 3683, CST) at 4°C overnight. The membranes were then incubated in HRP-conjugated secondary antibodies (1 : 3000, 7074, CST) for 1 h at room temperature. We used the ECL Western Blot Kit (Thermo Scientific Pierce) to examine the bands and scanned them using a LAS4000 analyzer (GE Healthcare). The immunoblot density was examined by ImageJ and normalized by β-actin or GAPDH.
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10

Renal Tubular Epithelial Cell Immunohistochemistry

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The EnVision two-step method was used for immunohistochemical staining; the instructions (Keap1 (10503-2-AP, Proteintech), Nrf2 (AF0639, Affinity), HO-1 (AF5393, Affinity), TGF-β1 (ABP52607, AmyJet Scientific), 8-oxo-dG (AF6980, Affinity)) were strictly followed. All the above detection indicators used PBS buffer instead of the primary antibody as a negative control. The above indicators were all positively expressed in the cytoplasm of renal tubular epithelial cells. Image-Pro Plus software was used to measure A values and perform protein semi-quantitative analysis.
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