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Deuterium oxide

Manufactured by Merck Group
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Deuterium oxide, also known as heavy water, is a colorless, odorless, and slightly viscous liquid. It is an isotopic form of water where the hydrogen atoms are replaced by deuterium atoms. Deuterium oxide has a higher density and a higher boiling point compared to regular water. It is used as a solvent and tracer in various scientific and industrial applications.

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280 protocols using deuterium oxide

1

Dissolution Kinetics of Drugs in Deuterium-Depleted Water

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The dissolution rate kinetics of poorly soluble drugs were researched in water solvents: ultrapure water (UPW) (>18 MΩ × cm−1 at 25 °C, TOC ≤ 5 ppb, Merck Millipore) with natural content of stable hydrogen (2)H isotope ~150 ppm; deuterium-depleted water (≤1, ppm deuterium oxide) obtained by means of liquid hydrogen low temperature vacuum rectification. Chemical purity: 99.5% for H2O (Merck, Darmstadt, Germany); deuterium oxide (99.9 atom % D, ALDRICH, Darmstadt, Germany).
The water samples were filtered through a submicron inert membrane filter (Millex-GV Filter with a 0.22 µm pore size hydrophilic PVDF membrane, Merck Millipore, Watford, UK).
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2

NMR Metabolomics Substrate Preparation

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DSS [3-(Trimethylsilyl)-1-propanesulfonic acid] sodium salt, L-aspartic acid,
L-glutamic acid, creatine, deuterium oxide, deuterium oxide including TSP
[3-(trimethylsilyl)propionic-2,2,3,3-d4 acid]
sodium salt, HEPES [4-(2-hydroxyethyl) piperazine-1-ethanesulfonic acid], and
mono- and di-phosphate sodium salt (anhydrous form) were purchased from
Sigma-Aldrich (St. Louis, MO, USA). MOPS (3-Morpholinopropanesulfonic acid) was
purchased from Amresco (Solon, OH, USA).
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3

NMR Spectroscopy Sample Preparation

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Deuterium oxide (D2O, 99.9% atom D) including 0.05% 3-(trimethylsilyl) propionic-2,2,3,3-d4 acid sodium salt (TSP), Deuterium oxide (D2O, 99.9% atom D), and monopotassium phosphate (KH2PO4) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Sodium deuteroxide solution (NaOD, 99.5% atom D; 40% in D2O) was purchased from Cambridge Isotope Laboratories, Inc. (Andover, MA, USA).
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4

Protein Purification and Analysis Protocol

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Dimethyl(2-hydroxy-5-nitrobenzyl)sulfonium bromide (HNSB), deuterium oxide, pepsin, imidazole, 3-morpholinopropanesulfonic acid (MOPS), potassium acetate, potassium bromide, urea, zinc sulfate, deuterium oxide, tris(2-carboxyethyl)phosphine (TCEP), and dithiothreitol (DTT) were obtained from Sigma-Aldrich (St. Louis, MO). urea was purchased from Mallinckrodt Chemicals (Phillipsburg, NJ). Trypsin was purchased from Promega (Madison, WI). Tris(hydroxymethyl)-aminomethane (Tris) and tris(hydroxymethyl)aminomethane hydrochloride (Tris-HCl) were purchased from EM Science (Gladstone, NJ). Human β2m that was purified from human urine was purchased from Lee Biosolutions (St. Louis, MO). Ammonium acetate, methanol, acetonitrile, glacial acetic acid, copper sulfate, and nickel sulfate were obtained from Fisher Scientific (Fair Lawn, NJ). Centricon molecular weight cutoff (MWCO) filters were obtained from Millipore (Burlington, MA). Deionized water was prepared from a Millipore (Burlington, MA) Simplicity 185 water purification system.
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5

Saliva and Plasma NMR Preparation

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A 540 µL aliquot of each saliva sample was mixed with 60 µL of NMR buffer in 5 mm outside diameter (OD) NMR tubes. NMR buffer for saliva was prepared as follow: 3 parts (V/V) deuterium oxide (99.9 atom % D, to provide a field frequency lock) (Sigma-Aldrich Corp. Milwaukee, WI, USA), and 1 part (V/V) stock of 2 mM of trimethylsilylpropanoic acid (TSP). The pH was adjusted to 7.4. Due to the low flow of plasma by finger prick collection, 90 µL of each plasma sample was mixed with 90 µL of NMR buffer in 3 mm OD NMR tubes. NMR buffer for plasma was prepared as follows: 1 part (V/V) deuterium oxide (99.9 atom % D, to provide a field frequency lock) (Sigma-Aldrich Corp. Milwaukee, WI, USA), 2 parts (V/V) of ultrapure water, and 1 part (V/V) stock of 2 mM of TSP. The pH was also adjusted to 7.4. In addition to individual analysis of the samples, a pooled saliva sample (15 µL of each saliva sample) and pooled plasma sample (4 µL of each plasma sample) were analyzed to ensure unambiguous assignment and as an external standard to verify the stability of the automation in the NMR analysis.
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6

Glycyrrhiza glabra Extract Purification

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ChemicalsExtract from Glycyrhizza glabra roots from FLOS (Mokrsko, Poland) was obtained by methanol extraction in a Soxhlet apparatus. Then, the extract was subjected to two nanofiltration processes, first using a 3-kDa (Merckmilipore, Darmstadt, Germany) membrane, then, the second, with the use of a 0.5-kDa membrane (TriSep, Sterlitech, Auburn, WA, USA). The process was conducted using Amicon Stirred Cell with a total volume of 200 mL (Merkmilipore). As a result, two fractions of extracts were used during the research, crude extract marked as GgC and purified extract (with molecules size between 3 kDa and 0.5 kDa), GgP.
In the presented studies, 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (DPPE, 99%; from Avanti Polar Lipids (Alabaster, AL, USA)) was used as the film and liposome forming substance. Chloroform of high-purity Uvasol (Merck, Warszawa, Poland) was used to prepare the Langmuir monolayer. Dulbecco′s Phosphate Buffered Saline (Sigma Aldrich, Poznań wielkopolskie, Poland) was applied as a solvent to prepare saponins solution or as a subphase.
Deuterium oxide was purchased from Merck KGaA (Darmstadt, Germany).
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7

Preparation of NMR Spectroscopy Reagents

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Potassium phosphate monobasic (KH2PO4), sodium azide (NaN3), and potassium hydroxide (KOH), were purchased from Sigma-Aldrich (St. Louis, Missouri, United States). Deuterium oxide and trimethylsilyl-2,2,3,3-tetradeuteropropionic acid (TSP) were acquired from Merck (Darmstadt, Germany).
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8

Alkyne Synthesis and Characterization

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Alkynes were purchased from Merck (Sigma‐Aldrich Company Ltd), The Old Brickyard, New Road, Gillingham, Dorset, SP8 4XT, UK, or were prepared by acylation of the appropriate alkynol with the corresponding acyl or sulphonyl chloride, using triethylamine as base, in dichloromethane. Deuterium oxide (99.9 atom%2H) and N,N‐dimethylformamide, DMF, (<0.005% water content) were also obtained from Merck (address above). General solvents and reagents were obtained from regular chemical supply houses and were used as received.
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9

Organogermanium Compounds in Glucose Isomerization

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Figure 1 shows the structures of the six organogermanium compounds (THGP, GPhe, N-Ac-GPhe, GAla, N-Ac-GAla, and GSuc) used in this study and the structure of the 1H-NMR reporter molecule, 3,3-dimethyl-3-(trihydroxygermyl)propanoic acid (DM-THGP). All organogermanium compounds used in this study were synthesized at Asai Germanium Research Institute Co., Ltd. D-Glucose (anhydrous) and deuterium oxide (99.9 % deuteration ratio) were purchased from the Merck KGaA (Damstat, Germany). D-Fructose, magnesium sulfate heptahydrate (guaranteed reagent grade), perchloric acid (guaranteed reagent grade), and sodium hydroxide (guaranteed reagent grade) were purchased from Kanto Chemical Co., Ltd. (Tokyo, Japan). The glucose isomerase (D-xylose isomerase EC 5.3.1.5) used was Nagase Enzymes G1-L (Nagase ChemteX Co., Ltd., Osaka, Japan). 3-(N-Morpholino) propanesulfonic acid (MOPS) was purchased from Tokyo Kasei Co., Ltd. (Tokyo, Japan). Distilled water was prepared using Advantec fully automatic distilled water manufacturing equipment (GSR-200; Advantec Toyo Kaisha, Ltd., Tokyo, Japan).

Organogermanium compounds used in the experiments.

The structures of the compounds in aqueous solution and their abbreviations are shown.

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10

Preparation of Extractive-Free Lignocellulosic Biomass

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1-butanol (99% purity) and acetone-d6 (99.5 atom% D) were purchased from Acros organics. Silicon dioxide (fused granular, 99.9% purity, mesh 4–20), sodium sulfate (99.0% purity), sodium hydroxide (≥97.0% purity), deuterated chloroform (99.8 atom% D), chromium acetylacetonate (97% purity), 2-chloro-4,4,5,5-tetramethyl-1,3,2-dioxaphospholane (95% purity), and deuterium oxide (99.9% atom% D) were purchased from Merck. Sulfuric acid (95–97% purity) and tetrahydrofuran (stabilized with BHT) were purchased from Boom B.V. Acetone (99.5% purity) and toluene were purchased from Macron Fine Chemicals. Endo-hydroxy-5-norbornene-2,3-dicarboximide was purchased from Fisher scientific. Walnut powder was bought from Brambleberry (Bellingham, WA, United States). Biomass preparation was performed via an earlier published procedure (Zijlstra et al., 2019b (link)), which includes ball-milling in order to obtain small particles and the removal of extractives from the biomass by a 2 h toluene extraction at reflux conditions in a roundbottom flask. The extraction liquor was removed by filtration and the extractive-free lignocellulosic feedstocks were dried in an oven in vacuo for 16 h at 70°C.
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